private void encodeResourceReferenceToStreamWriter(
XMLStreamWriter theEventWriter, BaseResourceReferenceDt theRef) throws XMLStreamException {
String reference = determineReferenceText(theRef);
if (StringUtils.isNotBlank(reference)) {
theEventWriter.writeStartElement(RESREF_REFERENCE);
theEventWriter.writeAttribute("value", reference);
theEventWriter.writeEndElement();
}
if (!(theRef.getDisplayElement().isEmpty())) {
theEventWriter.writeStartElement(RESREF_DISPLAY);
theEventWriter.writeAttribute("value", theRef.getDisplayElement().getValue());
theEventWriter.writeEndElement();
}
}
private void encodeChildElementToStreamWriter(
IBaseResource theResource,
XMLStreamWriter theEventWriter,
IBase nextValue,
String childName,
BaseRuntimeElementDefinition<?> childDef,
String theExtensionUrl,
boolean theIncludedResource)
throws XMLStreamException, DataFormatException {
if (nextValue.isEmpty()) {
if (childDef.getChildType() == ChildTypeEnum.CONTAINED_RESOURCES
&& getContainedResources().isEmpty() == false
&& theIncludedResource == false) {
// We still want to go in..
} else {
return;
}
}
switch (childDef.getChildType()) {
case PRIMITIVE_DATATYPE:
{
IPrimitiveType<?> pd = (IPrimitiveType<?>) nextValue;
String value = pd.getValueAsString();
if (value != null) {
theEventWriter.writeStartElement(childName);
theEventWriter.writeAttribute("value", value);
encodeExtensionsIfPresent(theResource, theEventWriter, nextValue, theIncludedResource);
theEventWriter.writeEndElement();
}
break;
}
case RESOURCE_BLOCK:
case COMPOSITE_DATATYPE:
{
theEventWriter.writeStartElement(childName);
if (isNotBlank(theExtensionUrl)) {
theEventWriter.writeAttribute("url", theExtensionUrl);
}
BaseRuntimeElementCompositeDefinition<?> childCompositeDef =
(BaseRuntimeElementCompositeDefinition<?>) childDef;
encodeCompositeElementToStreamWriter(
theResource, nextValue, theEventWriter, childCompositeDef, theIncludedResource);
theEventWriter.writeEndElement();
break;
}
case RESOURCE_REF:
{
BaseResourceReferenceDt ref = (BaseResourceReferenceDt) nextValue;
if (!ref.isEmpty()) {
theEventWriter.writeStartElement(childName);
encodeResourceReferenceToStreamWriter(theEventWriter, ref);
theEventWriter.writeEndElement();
}
break;
}
case CONTAINED_RESOURCES:
{
BaseContainedDt value = (BaseContainedDt) nextValue;
/*
* Disable per #103 for (IResource next : value.getContainedResources()) { if (getContainedResources().getResourceId(next) != null) { continue; }
* theEventWriter.writeStartElement("contained"); encodeResourceToXmlStreamWriter(next, theEventWriter, true, fixContainedResourceId(next.getId().getValue()));
* theEventWriter.writeEndElement(); }
*/
for (IBaseResource next : getContainedResources().getContainedResources()) {
IdDt resourceId = getContainedResources().getResourceId(next);
theEventWriter.writeStartElement("contained");
encodeResourceToXmlStreamWriter(
next, theEventWriter, true, fixContainedResourceId(resourceId.getValue()));
theEventWriter.writeEndElement();
}
break;
}
case RESOURCE:
{
theEventWriter.writeStartElement(childName);
IBaseResource resource = (IBaseResource) nextValue;
encodeResourceToXmlStreamWriter(resource, theEventWriter, false);
theEventWriter.writeEndElement();
break;
}
case PRIMITIVE_XHTML:
{
XhtmlDt dt = (XhtmlDt) nextValue;
if (dt.hasContent()) {
encodeXhtml(dt, theEventWriter);
}
break;
}
case EXTENSION_DECLARED:
case UNDECL_EXT:
{
throw new IllegalStateException("state should not happen: " + childDef.getName());
}
}
}
@Transactional(propagation = Propagation.REQUIRED)
@Override
public List<IResource> transaction(
RequestDetails theRequestDetails, List<IResource> theResources) {
ourLog.info("Beginning transaction with {} resources", theResources.size());
// Notify interceptors
ActionRequestDetails requestDetails = new ActionRequestDetails(null, null);
notifyInterceptors(RestOperationTypeEnum.TRANSACTION, requestDetails);
long start = System.currentTimeMillis();
Set<IdDt> allIds = new HashSet<IdDt>();
for (int i = 0; i < theResources.size(); i++) {
IResource res = theResources.get(i);
if (res.getId().hasIdPart()
&& !res.getId().hasResourceType()
&& !isPlaceholder(res.getId())) {
res.setId(new IdDt(toResourceName(res.getClass()), res.getId().getIdPart()));
}
/*
* Ensure that the bundle doesn't have any duplicates, since this causes all kinds of weirdness
*/
if (isPlaceholder(res.getId())) {
if (!allIds.add(res.getId())) {
throw new InvalidRequestException(
"Transaction bundle contains multiple resources with ID: " + res.getId());
}
} else if (res.getId().hasResourceType() && res.getId().hasIdPart()) {
IdDt nextId = res.getId().toUnqualifiedVersionless();
if (!allIds.add(nextId)) {
throw new InvalidRequestException(
"Transaction bundle contains multiple resources with ID: " + nextId);
}
}
}
FhirTerser terser = getContext().newTerser();
int creations = 0;
int updates = 0;
Map<IdDt, IdDt> idConversions = new HashMap<IdDt, IdDt>();
List<ResourceTable> persistedResources = new ArrayList<ResourceTable>();
List<IResource> retVal = new ArrayList<IResource>();
OperationOutcome oo = new OperationOutcome();
retVal.add(oo);
Date updateTime = new Date();
for (int resourceIdx = 0; resourceIdx < theResources.size(); resourceIdx++) {
IResource nextResource = theResources.get(resourceIdx);
IdDt nextId = nextResource.getId();
if (nextId == null) {
nextId = new IdDt();
}
String resourceName = toResourceName(nextResource);
BundleEntryTransactionMethodEnum nextResouceOperationIn =
ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.get(nextResource);
if (nextResouceOperationIn == null
&& hasValue(ResourceMetadataKeyEnum.DELETED_AT.get(nextResource))) {
nextResouceOperationIn = BundleEntryTransactionMethodEnum.DELETE;
}
String matchUrl = ResourceMetadataKeyEnum.LINK_SEARCH.get(nextResource);
Set<Long> candidateMatches = null;
if (StringUtils.isNotBlank(matchUrl)) {
candidateMatches = processMatchUrl(matchUrl, nextResource.getClass());
}
ResourceTable entity;
if (nextResouceOperationIn == BundleEntryTransactionMethodEnum.POST) {
entity = null;
} else if (nextResouceOperationIn == BundleEntryTransactionMethodEnum.PUT
|| nextResouceOperationIn == BundleEntryTransactionMethodEnum.DELETE) {
if (candidateMatches == null || candidateMatches.size() == 0) {
if (nextId == null || StringUtils.isBlank(nextId.getIdPart())) {
throw new InvalidRequestException(
getContext()
.getLocalizer()
.getMessage(
BaseHapiFhirSystemDao.class,
"transactionOperationFailedNoId",
nextResouceOperationIn.name()));
}
entity = tryToLoadEntity(nextId);
if (entity == null) {
if (nextResouceOperationIn == BundleEntryTransactionMethodEnum.PUT) {
ourLog.debug(
"Attempting to UPDATE resource with unknown ID '{}', will CREATE instead",
nextId);
} else if (candidateMatches == null) {
throw new InvalidRequestException(
getContext()
.getLocalizer()
.getMessage(
BaseHapiFhirSystemDao.class,
"transactionOperationFailedUnknownId",
nextResouceOperationIn.name(),
nextId));
} else {
ourLog.debug("Resource with match URL [{}] already exists, will be NOOP", matchUrl);
persistedResources.add(null);
retVal.add(nextResource);
continue;
}
}
} else if (candidateMatches.size() == 1) {
entity = loadFirstEntityFromCandidateMatches(candidateMatches);
} else {
throw new InvalidRequestException(
getContext()
.getLocalizer()
.getMessage(
BaseHapiFhirSystemDao.class,
"transactionOperationWithMultipleMatchFailure",
nextResouceOperationIn.name(),
matchUrl,
candidateMatches.size()));
}
} else if (nextId.isEmpty() || isPlaceholder(nextId)) {
entity = null;
} else {
entity = tryToLoadEntity(nextId);
}
BundleEntryTransactionMethodEnum nextResouceOperationOut;
if (entity == null) {
nextResouceOperationOut = BundleEntryTransactionMethodEnum.POST;
entity = toEntity(nextResource);
entity.setUpdated(updateTime);
entity.setPublished(updateTime);
if (nextId.isEmpty() == false && "cid:".equals(nextId.getBaseUrl())) {
ourLog.debug(
"Resource in transaction has ID[{}], will replace with server assigned ID",
nextId.getIdPart());
} else if (nextResouceOperationIn == BundleEntryTransactionMethodEnum.POST) {
if (nextId.isEmpty() == false) {
ourLog.debug(
"Resource in transaction has ID[{}] but is marked for CREATE, will ignore ID",
nextId.getIdPart());
}
if (candidateMatches != null) {
if (candidateMatches.size() == 1) {
ourLog.debug("Resource with match URL [{}] already exists, will be NOOP", matchUrl);
BaseHasResource existingEntity =
loadFirstEntityFromCandidateMatches(candidateMatches);
IResource existing = (IResource) toResource(existingEntity, false);
persistedResources.add(null);
retVal.add(existing);
continue;
}
if (candidateMatches.size() > 1) {
throw new InvalidRequestException(
getContext()
.getLocalizer()
.getMessage(
BaseHapiFhirSystemDao.class,
"transactionOperationWithMultipleMatchFailure",
BundleEntryTransactionMethodEnum.POST.name(),
matchUrl,
candidateMatches.size()));
}
}
} else {
createForcedIdIfNeeded(entity, nextId);
}
myEntityManager.persist(entity);
if (entity.getForcedId() != null) {
myEntityManager.persist(entity.getForcedId());
}
creations++;
ourLog.info(
"Resource Type[{}] with ID[{}] does not exist, creating it", resourceName, nextId);
} else {
nextResouceOperationOut = nextResouceOperationIn;
if (nextResouceOperationOut == null) {
nextResouceOperationOut = BundleEntryTransactionMethodEnum.PUT;
}
updates++;
ourLog.info("Resource Type[{}] with ID[{}] exists, updating it", resourceName, nextId);
}
persistedResources.add(entity);
retVal.add(nextResource);
ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.put(nextResource, nextResouceOperationOut);
}
ourLog.info("Flushing transaction to database");
myEntityManager.flush();
for (int i = 0; i < persistedResources.size(); i++) {
ResourceTable entity = persistedResources.get(i);
String resourceName = toResourceName(theResources.get(i));
IdDt nextId = theResources.get(i).getId();
IdDt newId;
if (entity == null) {
newId = retVal.get(i + 1).getId().toUnqualifiedVersionless();
} else {
newId = entity.getIdDt().toUnqualifiedVersionless();
}
if (nextId == null || nextId.isEmpty()) {
ourLog.info(
"Transaction resource (with no preexisting ID) has been assigned new ID[{}]",
nextId,
newId);
} else {
if (nextId.toUnqualifiedVersionless().equals(newId)) {
ourLog.info("Transaction resource ID[{}] is being updated", newId);
} else {
if (isPlaceholder(nextId)) {
// nextId = new IdDt(resourceName, nextId.getIdPart());
ourLog.info("Transaction resource ID[{}] has been assigned new ID[{}]", nextId, newId);
idConversions.put(nextId, newId);
idConversions.put(new IdDt(resourceName + "/" + nextId.getValue()), newId);
}
}
}
}
for (IResource nextResource : theResources) {
List<BaseResourceReferenceDt> allRefs =
terser.getAllPopulatedChildElementsOfType(nextResource, BaseResourceReferenceDt.class);
for (BaseResourceReferenceDt nextRef : allRefs) {
IdDt nextId = nextRef.getReference();
if (idConversions.containsKey(nextId)) {
IdDt newId = idConversions.get(nextId);
ourLog.info(" * Replacing resource ref {} with {}", nextId, newId);
nextRef.setReference(newId);
} else {
ourLog.debug(" * Reference [{}] does not exist in bundle", nextId);
}
}
}
ourLog.info("Re-flushing updated resource references and extracting search criteria");
for (int i = 0; i < theResources.size(); i++) {
IResource resource = theResources.get(i);
ResourceTable table = persistedResources.get(i);
if (table == null) {
continue;
}
InstantDt deletedInstantOrNull = ResourceMetadataKeyEnum.DELETED_AT.get(resource);
Date deletedTimestampOrNull =
deletedInstantOrNull != null ? deletedInstantOrNull.getValue() : null;
if (deletedInstantOrNull == null
&& ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.get(resource)
== BundleEntryTransactionMethodEnum.DELETE) {
deletedTimestampOrNull = updateTime;
ResourceMetadataKeyEnum.DELETED_AT.put(resource, new InstantDt(deletedTimestampOrNull));
}
updateEntity(resource, table, table.getId() != null, deletedTimestampOrNull, updateTime);
}
long delay = System.currentTimeMillis() - start;
ourLog.info(
"Transaction completed in {}ms with {} creations and {} updates",
new Object[] {delay, creations, updates});
oo.addIssue()
.setSeverity(IssueSeverityEnum.INFORMATION)
.setDetails(
"Transaction completed in "
+ delay
+ "ms with "
+ creations
+ " creations and "
+ updates
+ " updates");
return retVal;
}
