/**
* Assumes a UID must be unique as this is only looking for a listOfSubjects PRE FILTERED based on
* a studies list of subjects to be changed
*/
public LinkSubjectStudy getSubjectByUIDFromExistList(
List<LinkSubjectStudy> listOfSubjects, String subjectUID) {
for (LinkSubjectStudy potentialSubject : listOfSubjects) {
if (potentialSubject.getSubjectUID().equals(subjectUID)) {
return potentialSubject;
}
}
return null;
}
/*
* (non-Javadoc)
*
* @see au.org.theark.core.web.form.AbstractDetailForm#onSave(org.apache.wicket.markup.html.form.Form, org.apache.wicket.ajax.AjaxRequestTarget)
*/
@Override
protected void onSave(Form<ContactVO> containerForm, AjaxRequestTarget target) {
// Persist the phone number to the backend, associate the person in context with the phone
// object
Long personSessionId =
(Long)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID);
// Get the person and set it on the Phone object.
try {
boolean saveOk = true;
Person person = studyService.getPerson(personSessionId);
containerForm.getModelObject().getPhoneVo().getPhone().setPerson(person);
/*
// Make the area code mandatory only for landline phone (home/work) entries
String phType = containerForm.getModelObject().getPhone().getPhoneType().getName().toLowerCase();
if (!phType.equals("mobile")) {
// must be landline
if (containerForm.getModelObject().getPhone().getAreaCode() == null || containerForm.getModelObject().getPhone().getAreaCode().length() < 1) {
this.error("An area code must be entered for landline numbers");
saveOk = false;
}
}
*/
if (saveOk) {
// Ok to save...
String personType =
(String)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.PERSON_TYPE);
if (personType != null
&& personType.equalsIgnoreCase(
au.org.theark.core.Constants.PERSON_CONTEXT_TYPE_SUBJECT)) {
Long studyId =
(Long)
SecurityUtils.getSubject()
.getSession()
.getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
Study study = iArkCommonService.getStudy(studyId);
LinkSubjectStudy subjectInContext =
iArkCommonService.getSubject(
personSessionId, study); // This is fetched basically to display the
// info
// message along with the Subject UID or Contact ID
if (containerForm.getModelObject().getPhoneVo().getPhone().getId() == null) {
studyService.create(containerForm.getModelObject().getPhoneVo().getPhone());
this.info(
"Phone number was added and linked to Subject UID: "
+ subjectInContext.getSubjectUID());
} else {
studyService.update(containerForm.getModelObject().getPhoneVo().getPhone());
this.info(
"Phone number was updated and linked to Subject UID: "
+ subjectInContext.getSubjectUID());
}
} else if (personType != null
&& personType.equalsIgnoreCase(
au.org.theark.core.Constants.PERSON_CONTEXT_TYPE_CONTACT)) {
// TODO: Contact Interface implementation
}
processErrors(target);
onSavePostProcess(target);
} else {
processErrors(target);
}
} catch (ArkUniqueException aue) {
this.error(aue.getMessage());
} catch (EntityNotFoundException e) {
this.error("The Subject/Participant is not available in the system anymore");
} catch (ArkSystemException e) {
this.error("A System Exception has occured please contact Support.");
}
}
public VelocityContext getBioCollectionLabelContext(BioCollection bioCollection) {
VelocityContext velocityContext = new VelocityContext();
LinkSubjectStudy linkSubjectStudy = null;
try {
linkSubjectStudy =
iArkCommonService.getSubjectByUID(
bioCollection.getLinkSubjectStudy().getSubjectUID(), bioCollection.getStudy());
} catch (EntityNotFoundException e) {
log.error(e.getMessage());
}
try {
bioCollection = iBioCollectionDao.getBioCollection(bioCollection.getId());
} catch (EntityNotFoundException e) {
log.error(e.getMessage());
}
String subjectUid = linkSubjectStudy.getSubjectUID();
// ArkFunction arkFunction =
// iArkCommonService.getArkFunctionByName(au.org.theark.core.Constants.FUNCTION_KEY_VALUE_LIMS_COLLECTION);
ArkFunction arkFunction =
iArkCommonService.getArkFunctionByName(
au.org.theark.core.Constants.FUNCTION_KEY_VALUE_LIMS_CUSTOM_FIELD);
// Custom field name "FAMILYID"
BioCollectionCustomFieldData bioCollectionCustomFieldData =
iBioCollectionDao.getBioCollectionCustomFieldData(bioCollection, arkFunction, "FAMILYID");
String familyId = bioCollectionCustomFieldData.getTextDataValue();
// Custom field name "ASRBNO"
bioCollectionCustomFieldData =
iBioCollectionDao.getBioCollectionCustomFieldData(bioCollection, arkFunction, "ASRBNO");
String asrbno = bioCollectionCustomFieldData.getTextDataValue();
String collectionDate = new String();
if (bioCollection.getCollectionDate() != null) {
collectionDate = simpleDateFormat.format(bioCollection.getCollectionDate());
}
String refDoctor = new String();
if (bioCollection.getRefDoctor() != null) {
refDoctor = bioCollection.getRefDoctor();
}
String dateOfBirth = new String();
if (bioCollection.getLinkSubjectStudy().getPerson().getDateOfBirth() != null) {
dateOfBirth =
simpleDateFormat.format(bioCollection.getLinkSubjectStudy().getPerson().getDateOfBirth());
}
String sex = new String();
if (bioCollection.getLinkSubjectStudy().getPerson().getGenderType() != null) {
sex = bioCollection.getLinkSubjectStudy().getPerson().getGenderType().getName();
}
String collectionID = bioCollection.getBiocollectionUid();
String subjectFirstName = linkSubjectStudy.getPerson().getFirstName();
String subjectLastName = linkSubjectStudy.getPerson().getLastName();
String initials = subjectFirstName.charAt(0) + "" + subjectLastName.charAt(0);
velocityContext.put("initials", initials);
velocityContext.put("firstName", subjectFirstName);
velocityContext.put("lastName", subjectLastName);
velocityContext.put("collectionID", collectionID);
velocityContext.put("subjectUid", subjectUid);
velocityContext.put("familyId", familyId);
velocityContext.put("asrbno", asrbno);
velocityContext.put("collectionDate", collectionDate);
velocityContext.put("refDoctor", refDoctor);
velocityContext.put("dateOfBirth", dateOfBirth);
velocityContext.put("sex", sex);
return velocityContext;
}