void processTask(ETask task, ObjectMessage msg, EntityManager em) {
EMethod method;
EModel model;
Collection<EBounds> bounds;
TaskMessage tm;
System.out.println("Processing task [id=" + String.valueOf(task.getId()) + "]...");
method = task.getMethod();
model = task.getModel();
bounds = getBoundsForModel(model, em);
try {
tm = (TaskMessage) msg.getObject();
if (method.getIdent().equals(EMethod.fba)) {
FbaMethod.run(task, model, bounds);
} else if (method.getIdent().equals(EMethod.fva)) {
FvaMethod.run(task, model, bounds, (MultipleReactionsTaskMessage) tm);
} else if (method.getIdent().equals(EMethod.rscan)) {
RscanMethod.run(task, model, bounds, (MultipleReactionsTaskMessage) tm);
} else if (method.getIdent().equals(EMethod.kgene)) {
KgeneMethod.run(task, model, bounds);
}
msg.acknowledge();
} catch (AmkfbaException e) {
AcornLogger.logError("AmkfbaException: " + e.getMessage());
markAsBroken(task, em);
} catch (JMSException e) {
e.printStackTrace(System.err);
throw new Error("JMSException, aborting...");
}
}
