public void makePhi(int residueNumber, String label, Symbol.Stroke strokeType) {
Symbol firstO = diagram.getPeptideCarbonyl(residueNumber - 1);
Symbol lastO = diagram.getPeptideCarbonyl(residueNumber);
this.makeTorsion(label, firstO, lastO, residueNumber, 2, strokeType);
}
public void makePsi(int residueNumber, String label, Symbol.Stroke strokeType) {
Symbol firstN = diagram.getPeptideAmide(residueNumber);
Symbol lastN = diagram.getPeptideAmide(residueNumber + 1);
this.makeTorsion(label, firstN, lastN, residueNumber, 3, strokeType);
}
public void makeBond(Symbol startSymbol, Symbol endSymbol, Symbol.Stroke strokeType) {
diagram.makeBond(startSymbol, endSymbol, strokeType);
diagram.unselectAllBackboneSymbols();
this.repaint();
}