/**
* Retrieves and sets the default values for the entry. Some of these values (e.g. PI, and Funding
* Source) are set by individual users as part of their personal preferences
*
* @param userId Unique identifier for user requesting the values.
* @param type entry type
* @return PartData object with the retrieve part defaults
*/
public PartData getPartDefaults(String userId, EntryType type) {
PartData partData = new PartData(type);
PreferencesController preferencesController = new PreferencesController();
// pi defaults
String value =
preferencesController.getPreferenceValue(
userId, PreferenceKey.PRINCIPAL_INVESTIGATOR.name());
if (value != null) {
Account piAccount = accountController.getByEmail(value);
if (piAccount == null) {
partData.setPrincipalInvestigator(value);
} else {
partData.setPrincipalInvestigator(piAccount.getFullName());
partData.setPrincipalInvestigatorEmail(piAccount.getEmail());
partData.setPrincipalInvestigatorId(piAccount.getId());
}
}
// funding source defaults
value = preferencesController.getPreferenceValue(userId, PreferenceKey.FUNDING_SOURCE.name());
if (value != null) {
partData.setFundingSource(value);
}
// owner and creator details
Account account = accountController.getByEmail(userId);
if (account != null) {
partData.setOwner(account.getFullName());
partData.setOwnerEmail(account.getEmail());
partData.setCreator(partData.getOwner());
partData.setCreatorEmail(partData.getOwnerEmail());
}
// set the entry type defaults
return EntryUtil.setPartDefaults(partData);
}
private static Entry setCommon(Entry entry, PartData info) {
if (entry == null || info == null) return null;
if (info.getName() != null) entry.setName(info.getName());
if (info.getSelectionMarkers() != null) {
Set<SelectionMarker> markers = getSelectionMarkers(info.getSelectionMarkers(), entry);
entry.setSelectionMarkers(markers);
}
if (info.getReferences() != null) entry.setReferences(info.getReferences());
if (StringUtils.isBlank(entry.getPartNumber())) entry.setPartNumber(info.getPartId());
Date currentTime = new Date();
if (entry.getCreationTime() == null) entry.setCreationTime(currentTime);
entry.setModificationTime(currentTime);
if (info.getOwnerEmail() != null) {
entry.setOwnerEmail(info.getOwnerEmail());
}
if (info.getOwner() != null) entry.setOwner(info.getOwner());
if (info.getCreatorEmail() != null) {
entry.setCreatorEmail(info.getCreatorEmail());
}
if (info.getCreator() != null) entry.setCreator(info.getCreator());
if (info.getStatus() == null) {
if (StringUtils.isBlank(entry.getStatus())) entry.setStatus("");
} else entry.setStatus(info.getStatus());
if (info.getAlias() != null) entry.setAlias(info.getAlias());
if (info.getBioSafetyLevel() == null) {
if (entry.getBioSafetyLevel() == null) entry.setBioSafetyLevel(0);
} else entry.setBioSafetyLevel(info.getBioSafetyLevel());
if (info.getShortDescription() != null) entry.setShortDescription(info.getShortDescription());
if (info.getLongDescription() != null) entry.setLongDescription(info.getLongDescription());
if (info.getIntellectualProperty() != null)
entry.setIntellectualProperty(info.getIntellectualProperty());
Set<Link> links = getLinks(info.getLinks(), entry);
entry.setLinks(links);
Visibility visibility = info.getVisibility();
if (visibility != null) entry.setVisibility(visibility.getValue());
// checking for null instead of blank since it could be cleared
if (info.getFundingSource() != null) entry.setFundingSource(info.getFundingSource());
if (info.getPrincipalInvestigator() != null)
entry.setPrincipalInvestigator(info.getPrincipalInvestigator());
if (info.getPrincipalInvestigatorEmail() != null)
entry.setPrincipalInvestigatorEmail(info.getPrincipalInvestigatorEmail());
if (info.getKeywords() != null) entry.setKeywords(info.getKeywords());
// parameters
List<Parameter> parameters = getParameters(info.getCustomFields(), entry);
entry.setParameters(parameters);
return entry;
}
