@Test
public void testModificationPosition() throws Exception {
// in proteins and peptides MUST be reported with the position set to 0 (N-terminal)
// or the amino acid length +1 (C-terminal) respectively.
String dataLine =
"PEP\t"
+ "EIEIL\t"
+ "P02768\t"
+ "0\t"
+ "UniProtKB\t"
+ "2011_11\t"
+ "[MS,MS:1001207,Mascot,]|[MS,MS:1001208,Sequest,]\t"
+ "2\t"
+ "2\t"
+ "3\t"
+ "8-MOD:00397\t"
+ // position overflow
"10.2\t"
+ "1123.2|1145.3\t"
+ "2\t"
+ "1234.4\t"
+ "http://www.ebi.ac.uk/pride/link/to/peptide\t"
+ "ms_run[1]:index=5";
pepParser.parse(1, dataLine, errorList);
assertError(LogicalErrorType.ModificationPosition);
}
@Test
public void testUnique() throws Exception {
pepParser.checkUnique(pehFactory.findColumnByHeader("unique"), "x");
assertError(FormatErrorType.MZBoolean);
}
