public void validateBounds(Graphics g) {
if (!needCheckBounds && !needCheckTextBounds) return;
super.validateBounds(g);
// reset position to point the arrow point
int x = bounds.x + bounds.width - RenderableGene.GENE_SYMBOL_PAD;
int y = textBounds.y - RenderableGene.GENE_SYMBOL_WIDTH / 2;
setArrowPoint(x, y);
}
private void drawComponents(
Graphics g, List<Renderable> comps, Rectangle clip, boolean drawEdgeFirst) {
List<HyperEdge> edges = new ArrayList<HyperEdge>();
for (Renderable obj : comps) {
if (obj instanceof HyperEdge) edges.add((HyperEdge) obj);
}
if (drawEdgeFirst) {
// Draw HyperEdges
for (HyperEdge reaction : edges) {
// Have to validate connect nodes first in case empty bounds
List<Node> nodes = reaction.getConnectedNodes();
for (Node node : nodes) node.validateBounds(g);
reaction.validateConnectInfo();
if (clip.intersects(reaction.getBounds())) reaction.render(g);
}
}
// Draw complexes now
drawComplexes(comps, clip, g);
for (Renderable obj : comps) {
if (obj instanceof RenderableCompartment
|| obj instanceof RenderableComplex
|| obj instanceof RenderablePathway) continue; // Escape it. It should be drawn earlier.
if (obj instanceof Node) {
Node node = (Node) obj;
if (getHidePrivateNote() && (node instanceof Note) && ((Note) node).isPrivate()) continue;
node.validateBounds(g);
if (clip.intersects(node.getBounds())) node.render(g);
}
}
if (!drawEdgeFirst) {
// Draw HyperEdges
for (HyperEdge reaction : edges) {
reaction.validateConnectInfo();
if (clip.intersects(reaction.getBounds())) reaction.render(g);
}
}
}
