@Test
public void testBasic() {
final byte[] bases = "ACT".getBytes();
final MultiDeBruijnVertex v = new MultiDeBruijnVertex(bases);
org.testng.Assert.assertEquals(v.getSequence(), bases);
org.testng.Assert.assertEquals(v.getSequenceString(), new String(bases));
org.testng.Assert.assertEquals(v.length(), bases.length);
org.testng.Assert.assertEquals(v.getSuffix(), (byte) 'T');
org.testng.Assert.assertEquals(v.getSuffixString(), "T");
org.testng.Assert.assertEquals(v.getAdditionalSequence(true), bases);
org.testng.Assert.assertEquals(v.getAdditionalSequence(false).length, 1);
org.testng.Assert.assertEquals(v.getAdditionalSequence(false)[0], (byte) 'T');
}
@Test
public void test() {
final MultiDeBruijnVertex v1 = new MultiDeBruijnVertex("fred".getBytes());
final MultiDeBruijnVertex v2 = new MultiDeBruijnVertex("fred".getBytes());
Assert.assertNotEquals(v1, v2);
Assert.assertEquals(v1.getKmerSize(), 4);
Assert.assertEquals(v1.getSuffix(), (byte) 'd');
Assert.assertTrue(Arrays.equals(v1.getSequence(), "fred".getBytes()));
Assert.assertEquals(v1.getSuffixString(), "d");
Assert.assertTrue(Arrays.equals(v1.getAdditionalSequence(true), "fred".getBytes()));
Assert.assertTrue(Arrays.equals(v1.getAdditionalSequence(false), "d".getBytes()));
Assert.assertNotEquals(v1.hashCode(), v2.hashCode());
Assert.assertEquals(v1.getKmerSize(), v2.getKmerSize());
Assert.assertEquals(v1.getAdditionalInfo(), v2.getAdditionalInfo());
Assert.assertTrue(Arrays.equals(v1.getSequence(), v2.getSequence()));
Assert.assertEquals(v1.hasAmbiguousSequence(), v2.hasAmbiguousSequence());
v1.toString(); // not blow up - we dont check the string
}
@Test(expectedExceptions = IllegalArgumentException.class)
public void testNullRead() {
final MultiDeBruijnVertex v1 = new MultiDeBruijnVertex("fred".getBytes());
v1.addRead(null);
}
