public HeatMapData generateMeanHeatMapData(ArrayList<String> probeList) {
HeatMapData hmd = new HeatMapData(HeatMapData.ONE_COLOR);
double[][] ddata = new double[probeList.size()][tissues.size() * meanStrains.size()];
int actualSize = 0;
for (int i = 0; i < probeList.size(); i++) {
// System.out.println("get data:"+probeList.get(i));
HashMap tmp = (HashMap) data.get(probeList.get(i));
if (tmp != null) {
ArrayList<Double> row = (ArrayList<Double>) tmp.get("meanRow");
for (int j = 0; j < row.size(); j++) {
ddata[i][j] = row.get(j).doubleValue();
}
actualSize++;
} else {
// System.out.println();
probeList.remove(i);
i--;
}
}
double[][] tmpdata = new double[actualSize][tissues.size() * meanStrains.size()];
for (int i = 0; i < tmpdata.length; i++) {
tmpdata[i] = ddata[i];
}
hmd.setDataString(tmpdata, probeList, false);
return hmd;
}
public HeatMapData generateFoldDiffHeatMapData(ArrayList<String> probeList) {
HeatMapData hmd = new HeatMapData(HeatMapData.TWO_COLOR);
double[][] ddata = new double[probeList.size()][tissues.size() * fdStrains.size()];
int actualSize = 0;
for (int i = 0; i < probeList.size(); i++) {
HashMap tmp = (HashMap) data.get(probeList.get(i));
if (tmp != null) {
ArrayList<Double> row = (ArrayList<Double>) tmp.get("fcRow");
for (int j = 0; j < row.size(); j++) {
ddata[i][j] = row.get(j).doubleValue();
}
actualSize++;
} else {
probeList.remove(i);
i--;
}
}
double[][] tmpdata = new double[actualSize][tissues.size() * meanStrains.size()];
for (int i = 0; i < tmpdata.length; i++) {
tmpdata[i] = ddata[i];
}
hmd.setDataString(tmpdata, probeList, true);
return hmd;
}
