private void storeEvidence() throws ObjectStoreException {
for (Set<Evidence> annotationEvidence : goTermGeneToEvidence.values()) {
List<String> evidenceRefIds = new ArrayList<String>();
Integer goAnnotationRefId = null;
for (Evidence evidence : annotationEvidence) {
Item goevidence = createItem("DOEvidence");
goevidence.setReference("code", evidenceCodes.get(evidence.getEvidenceCode()));
List<String> publicationEvidence = evidence.getPublications();
if (!publicationEvidence.isEmpty()) {
goevidence.setCollection("publications", publicationEvidence);
}
store(goevidence);
evidenceRefIds.add(goevidence.getIdentifier());
goAnnotationRefId = evidence.getStoredAnnotationId();
}
ReferenceList refIds = new ReferenceList("evidence", new ArrayList<String>(evidenceRefIds));
store(refIds, goAnnotationRefId);
}
}
