public void testBeadtrack() throws FileNotFoundException, IOException, LogFile.LockException {
// TEMP
if (Utilities.isWindowsOS()) {
return;
}
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(manager, AutodocFactory.BEADTRACK, AxisID.ONLY, false);
assertFalse(autodoc.isError());
}
public void testJoinRejoin()
throws LogFile.LockException, IOException, SystemProcessException, InvalidParameterException {
String fileName = "join-rejoin.adoc";
File file = new File(testsDir, fileName);
if (!file.exists() || !file.canRead()) {
file = new File(new File(new File("."), "tests"), fileName);
}
ReadOnlyAutodoc autodoc = AutodocFactory.getInstance(manager, file, false);
assertFalse(autodoc.isError());
}
public void testUitest()
throws LogFile.LockException, IOException, SystemProcessException, InvalidParameterException {
String fileName = "uitest.adoc";
File file = new File(testsDir, fileName);
if (!file.exists() || !file.canRead()) {
file = new File(new File(new File("."), "tests"), fileName);
}
ReadOnlyAutodoc autodoc = AutodocFactory.getInstance(manager, file, false);
// The file come from ./tests, so the working directory should be the default for
// tests run from eclipse.
assertFalse(autodoc.isError());
}
public void testCpu()
throws LogFile.LockException, IOException, SystemProcessException, InvalidParameterException {
if (Utilities.isWindowsOS()) {
return;
}
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(
manager,
TestUtilites.INSTANCE.copyTestFile(
AutodocTests.TEST_ROOT_DIR.getAbsolutePath(), TEST_DIR_NAME, "cpu.adoc"),
false);
assertFalse(autodoc.isError());
}
public void testFineAlign()
throws LogFile.LockException, IOException, SystemProcessException, InvalidParameterException {
String fileName = "fine-align.adoc";
File file = new File(testsDir, fileName);
if (!file.exists() || !file.canRead()) {
file = new File(new File(new File("."), "tests"), fileName);
}
ReadOnlyAutodoc autodoc = AutodocFactory.getInstance(manager, file, false);
// only use with getTestInstance
// autodoc.runInternalTest(AutodocFactory.InternalTestType.PARSER,false,false);
// only use with getInstance
// autodoc.printStoredData();
assertFalse(autodoc.isError());
}
public void testSimple()
throws LogFile.LockException, IOException, SystemProcessException, InvalidParameterException {
if (Utilities.isWindowsOS()) {
return;
}
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(
manager,
TestUtilites.INSTANCE.copyTestFile(
AutodocTests.TEST_ROOT_DIR.getAbsolutePath(), TEST_DIR_NAME, "simple.adoc"),
false);
// only use with getTestInstance
// autodoc.runInternalTest(AutodocFactory.InternalTestType.PARSER,false,false);
// only use with getInstance
// autodoc.printStoredData();
assertFalse(autodoc.isError());
}
public void testCorrSearch3d() throws FileNotFoundException, IOException, LogFile.LockException {
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(manager, AutodocFactory.CORR_SEARCH_3D, AxisID.ONLY, false);
assertFalse(autodoc.isError());
}
public void testCombineFft() throws FileNotFoundException, IOException, LogFile.LockException {
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(manager, AutodocFactory.COMBINE_FFT, AxisID.ONLY, false);
assertFalse(autodoc.isError());
}
public void testCcderaser() throws FileNotFoundException, IOException, LogFile.LockException {
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(manager, AutodocFactory.CCDERASER, AxisID.ONLY, false);
assertFalse(autodoc.isError());
}
public void testXfjointomo() throws FileNotFoundException, IOException, LogFile.LockException {
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(manager, AutodocFactory.XFJOINTOMO, AxisID.ONLY, false);
assertFalse(autodoc.isError());
}
public void testTiltxcorr() throws FileNotFoundException, IOException, LogFile.LockException {
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(manager, AutodocFactory.TILTXCORR, AxisID.ONLY, false);
assertFalse(autodoc.isError());
}
public void testSolvematch() throws FileNotFoundException, IOException, LogFile.LockException {
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(manager, AutodocFactory.SOLVEMATCH, AxisID.ONLY, false);
assertFalse(autodoc.isError());
}
public void testNewstack() throws FileNotFoundException, IOException, LogFile.LockException {
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(manager, AutodocFactory.NEWSTACK, AxisID.ONLY, false);
assertFalse(autodoc.isError());
}
public void testWarpVol() throws FileNotFoundException, IOException, LogFile.LockException {
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(manager, AutodocFactory.WARP_VOL, AxisID.ONLY, false);
assertFalse(autodoc.isError());
}
public void testCtfPhaseFlip() throws FileNotFoundException, IOException, LogFile.LockException {
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(manager, AutodocFactory.CTF_PHASE_FLIP, AxisID.ONLY, false);
assertFalse(autodoc.isError());
}