caArray is an Open Source project that provides the functionalities of a microarray repository, allowing researchers to share microarray experiment annotations and data. It is a J2EE web application, built with EJB3, Hibernate, Struts2 and several other open source technologies. It includes a "Java API" (a set of remote EJBs), and a caGrid API.
caArray is distributed under the BSD 3-Clause License. Please see the NOTICE and LICENSE files for details.
You will find more details about caArray in the following links:
- Home Page: https://wiki.nci.nih.gov/x/nIEOAQ (Requires login. Email NCI CBIIT Application Support for access.)
- Wiki Documentation: https://wiki.nci.nih.gov/x/34Kl (Requires login. Email NCI CBIIT Application Support for access.)
- Code Repository: http://github.com/NCIP/caarray
- Documentation Repository: http://github.com/NCIP/caarray-docs
- Mailing List: caarray_users-l@list.nih.gov
The National Cancer Institute (NCI) Center for Biomedical Informatics and Information Technology (CBIIT) instance of the caArray database was retired on March 31st, 2015. All publicly-accessible caArray data and annotations will be archived and will remain available via FTP download and is also available at GEO. While NCI will not be able to provide technical support for the caArray software after the retirement, the source code is available on GitHub, and we encourage continued community development.
If you have any further questions, please contact the NCI CBIIT Application Support team.
Update November 18th, 2014: Molecular Analysis of Brain Neoplasia (Rembrandt fine-00037) gene expression data has been loaded into ArrayExpress: ArrayExpress accession: E-MTAB-3073
Please join us in further developing and improving caArray.