@Override
public void service(ServletRequest request, ServletResponse response)
throws ServletException, IOException {
String mitabUrl = request.getParameter("mitabUrl");
String url = mitabUrl.substring(0, mitabUrl.lastIndexOf("/"));
String query = mitabUrl.substring(mitabUrl.lastIndexOf("/"));
if (query != null) {
query = UrlUtils.encodeUrl(query);
String encodedUrl = url + query;
if (log.isDebugEnabled()) log.debug("encodedUrl: " + encodedUrl);
final URL inputUrl = new URL(encodedUrl);
final InputStream is = inputUrl.openStream();
ServletOutputStream stream = response.getOutputStream();
try {
response.setContentType("text/plain");
final Tab2Cytoscapeweb tab2Cytoscapeweb = new Tab2Cytoscapeweb();
String output = null;
try {
output = tab2Cytoscapeweb.convert(is);
} catch (PsimiTabException e) {
throw new IllegalStateException("Could not parse input MITAB.", e);
}
stream.write(output.getBytes());
stream.flush();
} finally {
is.close();
}
}
} // We don't have url
