public void createStudyDefinition(Message message) throws RemoteException {
List<Study> objects =
xmUtils.getDomainObjectsFromList(Study.class, xmUtils.getArguments(message));
if (objects.size() != 1) {
throw new RemoteException(
"Illegal Argument(s). Make sure there is exactly one study defination in the message.");
}
WebRequest webRequest =
SessionAndAuditHelper.setupHibernateSessionAndAudit(
interceptor, "C3PR Admin", "Coordinating Center", new Date(), "Coordinating Center");
try {
Study study = objects.get(0);
studyFactory.buildStudy(study);
for (StudySite studySite : study.getStudySites()) {
studySite.setHostedMode(false);
// TODO fix it later
// studySite.setSiteStudyStatus(SiteStudyStatus.PENDING);
}
for (StudyCoordinatingCenter studyCoordinatingCenter : study.getStudyCoordinatingCenters()) {
studyCoordinatingCenter.setHostedMode(false);
}
study.setCoordinatingCenterStudyStatus(CoordinatingCenterStudyStatus.PENDING);
studyDao.save(study);
studyRepository.createStudy(study.getIdentifiers());
} catch (C3PRCodedException e) {
throw new RemoteException("error building the study", e);
} finally {
SessionAndAuditHelper.tearDownHibernateSession(interceptor, webRequest);
}
}
/*
* Return true only if the state is modified in anyway.
*/
@Override
public boolean onSave(
Object entity, Serializable id, Object[] state, String[] propertyNames, Type[] types) {
log.debug(this.getClass().getName() + ": Entering onSave()");
// Every new registration is handled here.
if (entity instanceof StudySubjectStudyVersion) {
handleNewStudySubjectSaved(
null,
((StudySubjectStudyVersion) entity).getStudySubject().getRegWorkflowStatus(),
entity);
}
/* if(entity instanceof StudySubject){
handleNewStudySubjectSaved(null,((StudySubject)entity).getRegWorkflowStatus(), entity);
}*/
// Every new study...notification is onyl sent if new stuayd status is Active
if (entity instanceof Study) {
handleStudyStatusChange(null, ((Study) entity).getCoordinatingCenterStudyStatus(), entity);
}
// New Study Site .....currently not implemented
if (entity instanceof SiteStatusHistory) {
StudySite studySite = ((SiteStatusHistory) entity).getStudySite();
handleStudySiteStatusChange(null, studySite.getSiteStudyStatus(), studySite);
}
// saving correspondence activate rules only if follow_up is needed and either person_spoken_to
// or notified_study_personnel is present
/*if(entity instanceof Correspondence && ((Correspondence)entity).getFollowUpNeeded() &&
(((Correspondence)entity).getPersonSpokenTo()!=null || ((Correspondence)entity).getNotifiedStudyPersonnel().size()>0)){
activateRulesForNewOrUpdatedCorrespondence((Correspondence)entity);
}*/
log.debug(this.getClass().getName() + ": Exiting onSave()");
return false;
}
public void activateStudySite(gov.nih.nci.cabig.ccts.domain.Message message)
throws RemoteException {
List arguments = xmUtils.getArguments(message);
List<Identifier> identifiers = xmUtils.getDomainObjectsFromList(Identifier.class, arguments);
if (identifiers.size() == 0) {
throw new RemoteException(
"Illegal Argument(s). Make sure there is atleast one identifier in the message.");
}
List<StudySite> studySiteList = xmUtils.getDomainObjectsFromList(StudySite.class, arguments);
if (studySiteList.size() != 1) {
throw new RemoteException(
"Illegal Argument(s). Make sure there is atleast one study site defination in the message.");
}
WebRequest webRequest =
SessionAndAuditHelper.setupHibernateSessionAndAudit(
interceptor, "C3PR Admin", "Coordinating Center", new Date(), "Coordinating Center");
try {
StudySite studySite =
studyRepository
.getUniqueStudy(identifiers)
.getStudySite(studySiteList.get(0).getHealthcareSite().getPrimaryIdentifier());
studySite.setIrbApprovalDate(studySiteList.get(0).getIrbApprovalDate());
// TODO fix it later
// studySite.setStartDate(studySiteList.get(0).getStartDate());
studySiteDao.save(studySite);
// TODO fix it later
// studyRepository.activateStudySite(identifiers,
// studySiteList.get(0).getHealthcareSite().getPrimaryIdentifier());
} catch (Exception e) {
throw new RemoteException(e.getMessage());
} finally {
SessionAndAuditHelper.tearDownHibernateSession(interceptor, webRequest);
}
}
/**
* Activate rules for accruals. Called for new registrations only. Checks if accrual notifications
* are configured. Fires rules if thresholds are met.
*
* @param studySubjectObj the study subject obj
*/
private void activateRulesForAccruals(Object studySubjectObj) {
StudySubject studySubject = null;
StudyOrganization studyOrg = null;
StudySite studySite = null;
if (studySubjectObj instanceof StudySubject) {
studySubject = (StudySubject) studySubjectObj;
} else {
return;
}
List<Object> objects = new ArrayList<Object>();
objects.add(studySubject);
int studyAccruals = 0;
int threshold = 0;
List<HealthcareSite> hcsList = getSites(studySubject);
for (PlannedNotification pn : getPlannedNotifications(hcsList)) {
if (pn.getEventName().equals(NotificationEventTypeEnum.STUDY_ACCRUAL_EVENT)) {
Iterator<StudyOrganization> iter =
studySubject.getStudySite().getStudy().getStudyOrganizations().iterator();
while (iter.hasNext()) {
studyOrg = iter.next();
// ensure that the host org is in the studyOrg list for the study
if (studyOrg
.getHealthcareSite()
.getPrimaryIdentifier()
.equalsIgnoreCase(configuration.get(Configuration.LOCAL_NCI_INSTITUTE_CODE))) {
studyAccruals = calculateStudyAccrual(studySubject);
threshold = studySubject.getStudySite().getStudy().getTargetAccrualNumber().intValue();
// if accruals exceed specified threshold value then send out email
if (studyAccruals * 100 / threshold >= pn.getStudyThreshold()) {
objects.add(pn);
rulesDelegationService.activateRules(
NotificationEventTypeEnum.STUDY_ACCRUAL_EVENT, objects);
}
}
}
}
if (pn.getEventName().equals(NotificationEventTypeEnum.STUDY_SITE_ACCRUAL_EVENT)) {
studySite = studySubject.getStudySite();
// ensure that the host org is in the studySite list for the study
if (studySite
.getHealthcareSite()
.getPrimaryIdentifier()
.equalsIgnoreCase(configuration.get(Configuration.LOCAL_NCI_INSTITUTE_CODE))) {
studyAccruals = calculateStudySiteAccrual(studySubject);
threshold = studySubject.getStudySite().getTargetAccrualNumber().intValue();
// if accruals exceed specified threshold value then send out email
if ((studyAccruals / threshold) * 100 >= pn.getStudySiteThreshold()) {
objects.add(pn);
rulesDelegationService.activateRules(
NotificationEventTypeEnum.STUDY_SITE_ACCRUAL_EVENT, objects);
}
}
}
}
}
