public void test1() throws Exception {
OboConverter converter =
new OboConverter(itemWriter, model, "", "SO", "http://www.flymine.org", "OntologyTerm");
OboTerm a = new OboTerm("SO:42", "parent");
OboTerm b = new OboTerm("SO:43", "child");
OboTerm c = new OboTerm("SO:44", "partof");
OboTerm d = new OboTerm("SO:45", "obsolete");
d.setObsolete(true);
c.addSynonym(new OboTermSynonym("syn2", "exact_synonym"));
b.addSynonym(new OboTermSynonym("syn1", "narrow_synonym"));
b.addSynonym(new OboTermSynonym("syn2", "exact_synonym"));
d.addSynonym(new OboTermSynonym("syn2", "exact_synonym"));
d.addSynonym(new OboTermSynonym("syn3", "narrow_synonym"));
OboRelation r1 = new OboRelation("SO:43", "SO:42", new OboTypeDefinition("is_a", "is_a", true));
OboRelation r2 =
new OboRelation("SO:44", "SO:43", new OboTypeDefinition("part_of", "part_of", true));
OboRelation r3 = new OboRelation("SO:43", "SO:45", new OboTypeDefinition("is_a", "is_a", true));
converter.setOboTerms(Arrays.asList(new OboTerm[] {a, b, c, d}));
converter.setOboRelations(Arrays.asList(new OboRelation[] {r1, r2, r3}));
converter.storeItems();
// writeItemsFile(itemWriter.getItems(), "obo-converter-tgt.xml");
assertEquals(readItemSet("OboConverterTest.xml"), itemWriter.getItems());
}
