@Test public void testBasic() { final byte[] bases = "ACT".getBytes(); final MultiDeBruijnVertex v = new MultiDeBruijnVertex(bases); org.testng.Assert.assertEquals(v.getSequence(), bases); org.testng.Assert.assertEquals(v.getSequenceString(), new String(bases)); org.testng.Assert.assertEquals(v.length(), bases.length); org.testng.Assert.assertEquals(v.getSuffix(), (byte) 'T'); org.testng.Assert.assertEquals(v.getSuffixString(), "T"); org.testng.Assert.assertEquals(v.getAdditionalSequence(true), bases); org.testng.Assert.assertEquals(v.getAdditionalSequence(false).length, 1); org.testng.Assert.assertEquals(v.getAdditionalSequence(false)[0], (byte) 'T'); }
@Test public void test() { final MultiDeBruijnVertex v1 = new MultiDeBruijnVertex("fred".getBytes()); final MultiDeBruijnVertex v2 = new MultiDeBruijnVertex("fred".getBytes()); Assert.assertNotEquals(v1, v2); Assert.assertEquals(v1.getKmerSize(), 4); Assert.assertEquals(v1.getSuffix(), (byte) 'd'); Assert.assertTrue(Arrays.equals(v1.getSequence(), "fred".getBytes())); Assert.assertEquals(v1.getSuffixString(), "d"); Assert.assertTrue(Arrays.equals(v1.getAdditionalSequence(true), "fred".getBytes())); Assert.assertTrue(Arrays.equals(v1.getAdditionalSequence(false), "d".getBytes())); Assert.assertNotEquals(v1.hashCode(), v2.hashCode()); Assert.assertEquals(v1.getKmerSize(), v2.getKmerSize()); Assert.assertEquals(v1.getAdditionalInfo(), v2.getAdditionalInfo()); Assert.assertTrue(Arrays.equals(v1.getSequence(), v2.getSequence())); Assert.assertEquals(v1.hasAmbiguousSequence(), v2.hasAmbiguousSequence()); v1.toString(); // not blow up - we dont check the string }