private Item getGene(String geneCG) throws ObjectStoreException {
if (rslv == null || !rslv.hasTaxon(TAXON_FLY)) {
return null;
}
int resCount = rslv.countResolutions(TAXON_FLY, geneCG);
if (resCount != 1) {
LOG.info(
"RESOLVER: failed to resolve gene to one identifier, ignoring gene: "
+ geneCG
+ " count: "
+ resCount
+ " FBgn: "
+ rslv.resolveId(TAXON_FLY, geneCG));
return null;
}
String primaryIdentifier = rslv.resolveId(TAXON_FLY, geneCG).iterator().next();
if (genes.containsKey(primaryIdentifier)) {
return genes.get(primaryIdentifier);
}
Item gene = createItem("Gene");
gene.setAttribute("primaryIdentifier", primaryIdentifier);
gene.setReference("organism", orgDrosophila);
genes.put(primaryIdentifier, gene);
store(gene);
return gene;
}
