public String getNotation()
throws NotationException, IOException, MonomerException, JDOMException {
ComplexProtein cp = new ComplexProtein();
cp.setSequences(getSequences());
if (annotationTable.getCellEditor() != null) {
annotationTable.getCellEditor().stopCellEditing();
}
cp.setAnnotations(annotationTableModel.getPopulatedSeqeuenceAnnotations());
if (connectionTable.getCellEditor() != null) {
connectionTable.getCellEditor().stopCellEditing();
}
cp.setConnections(connectionTableModel.getPopulatedConnections());
return cp.getNotation();
}
