private static void setFlagCoding(Band band, FlagCoding flagCoding) {
if (flagCoding != null) {
final String flagCodingName = flagCoding.getName();
final Product product = band.getProduct();
if (!product.getFlagCodingGroup().contains(flagCodingName)) {
addFlagCoding(product, flagCoding);
}
band.setSampleCoding(product.getFlagCodingGroup().get(flagCodingName));
}
}
@Override
protected void addFlagsAndMasks(Product product) {
Band QFBand = product.getBand("l3m_qual");
if (QFBand != null) {
FlagCoding flagCoding = new FlagCoding("SST_Quality");
flagCoding.addFlag("Best", 0x00, "Highest quality retrieval");
flagCoding.addFlag("Good", 0x01, "Good quality retrieval");
flagCoding.addFlag("Questionable", 0x02, "Questionable quality retrieval");
flagCoding.addFlag("Bad", 0x03, "Bad quality retrieval");
product.getFlagCodingGroup().add(flagCoding);
QFBand.setSampleCoding(flagCoding);
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Best",
"Highest quality retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l3m_qual == 0",
SeadasFileReader.Cornflower,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Good",
"Good quality retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l3m_qual == 1",
SeadasFileReader.LightPurple,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Questionable",
"Questionable quality retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l3m_qual == 2",
SeadasFileReader.BurntUmber,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Bad",
"Bad quality retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l3m_qual == 3",
SeadasFileReader.FailRed,
0.6));
}
QFBand = product.getBand("qual_sst");
if (QFBand != null) {
FlagCoding flagCoding = new FlagCoding("SST_Quality");
flagCoding.addFlag("Best", 0x00, "Highest quality retrieval");
flagCoding.addFlag("Good", 0x01, "Good quality retrieval");
flagCoding.addFlag("Questionable", 0x02, "Questionable quality retrieval");
flagCoding.addFlag("Bad", 0x03, "Bad quality retrieval");
product.getFlagCodingGroup().add(flagCoding);
QFBand.setSampleCoding(flagCoding);
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Best",
"Highest quality retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst == 0",
SeadasFileReader.Cornflower,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Good",
"Good quality retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst == 1",
SeadasFileReader.LightPurple,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Questionable",
"Questionable quality retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst == 2",
SeadasFileReader.BurntUmber,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Bad",
"Bad quality retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst == 3",
SeadasFileReader.FailRed,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"No Data",
"No data retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst == -1",
SeadasFileReader.MediumGray,
0.6));
}
QFBand = product.getBand("qual_sst4");
if (QFBand != null) {
FlagCoding flagCoding = new FlagCoding("SST_Quality");
flagCoding.addFlag("Best", 0x00, "Highest quality retrieval");
flagCoding.addFlag("Good", 0x01, "Good quality retrieval");
flagCoding.addFlag("Questionable", 0x02, "Questionable quality retrieval");
flagCoding.addFlag("Bad", 0x03, "Bad quality retrieval");
product.getFlagCodingGroup().add(flagCoding);
QFBand.setSampleCoding(flagCoding);
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Best",
"Highest quality retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst4 == 0",
SeadasFileReader.Cornflower,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Good",
"Good quality retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst4 == 1",
SeadasFileReader.LightPurple,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Questionable",
"Questionable quality retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst4 == 2",
SeadasFileReader.BurntUmber,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Bad",
"Bad quality retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst4 == 3",
SeadasFileReader.FailRed,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"No Data",
"No data retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst4 == -1",
SeadasFileReader.MediumGray,
0.6));
}
}
protected void addFlagsAndMasks(Product product) {
Band QFBand = product.getBand("l2_flags");
if (QFBand != null) {
FlagCoding flagCoding = new FlagCoding("L2Flags");
flagCoding.addFlag("ATMFAIL", 0x01, "Atmospheric correction failure");
flagCoding.addFlag("LAND", 0x02, "Land");
flagCoding.addFlag("PRODWARN", 0x04, "One (or more) product algorithms generated a warning");
flagCoding.addFlag("HIGLINT", 0x08, "High glint determined");
flagCoding.addFlag("HILT", 0x10, "High (or saturating) TOA radiance");
flagCoding.addFlag("HISATZEN", 0x20, "Large satellite zenith angle");
flagCoding.addFlag("COASTZ", 0x40, "Shallow water (<30m)");
flagCoding.addFlag("SPARE8", 0x80, "Unused");
flagCoding.addFlag("STRAYLIGHT", 0x100, "Straylight determined");
flagCoding.addFlag("CLDICE", 0x200, "Cloud/Ice determined");
flagCoding.addFlag("COCCOLITH", 0x400, "Coccolithophores detected");
flagCoding.addFlag("TURBIDW", 0x800, "Turbid water determined");
flagCoding.addFlag("HISOLZEN", 0x1000, "High solar zenith angle");
flagCoding.addFlag("SPARE14", 0x2000, "Unused");
flagCoding.addFlag("LOWLW", 0x4000, "Low Lw @ 555nm (possible cloud shadow)");
flagCoding.addFlag("CHLFAIL", 0x8000, "Chlorophyll algorithm failure");
flagCoding.addFlag("NAVWARN", 0x10000, "Navigation suspect");
flagCoding.addFlag("ABSAER", 0x20000, "Absorbing Aerosols determined");
flagCoding.addFlag("SPARE19", 0x40000, "Unused");
flagCoding.addFlag("MAXAERITER", 0x80000, "Maximum iterations reached for NIR iteration");
flagCoding.addFlag("MODGLINT", 0x100000, "Moderate glint determined");
flagCoding.addFlag("CHLWARN", 0x200000, "Chlorophyll out-of-bounds (<0.01 or >100 mg m^-3)");
flagCoding.addFlag(
"ATMWARN", 0x400000, "Atmospheric correction warning; Epsilon out-of-bounds");
flagCoding.addFlag("SPARE24", 0x800000, "Unused");
flagCoding.addFlag("SEAICE", 0x1000000, "Sea ice determined");
flagCoding.addFlag("NAVFAIL", 0x2000000, "Navigation failure");
flagCoding.addFlag("FILTER", 0x4000000, "Insufficient data for smoothing filter");
flagCoding.addFlag("SSTWARN", 0x8000000, "Sea surface temperature suspect");
flagCoding.addFlag("SSTFAIL", 0x10000000, "Sea surface temperature algorithm failure");
flagCoding.addFlag("HIPOL", 0x20000000, "High degree of polariztion determined");
flagCoding.addFlag(
"PRODFAIL", 0x40000000, "One (or more) product algorithms produced a failure");
flagCoding.addFlag("SPARE32", 0x80000000, "Unused");
product.getFlagCodingGroup().add(flagCoding);
QFBand.setSampleCoding(flagCoding);
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"ATMFAIL",
"Atmospheric correction failure",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.ATMFAIL",
FailRed,
0.0));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"LAND",
"Land",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.LAND",
LandBrown,
0.0));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"PRODWARN",
"One (or more) product algorithms generated a warning",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.PRODWARN",
DeepBlue,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"HILT",
"High (or saturating) TOA radiance",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.HILT",
Color.GRAY,
0.2));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"HIGLINT",
"High glint determined",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.HIGLINT",
BrightPink,
0.2));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"HISATZEN",
"Large satellite zenith angle",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.HISATZEN",
LightCyan,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"COASTZ",
"Shallow water (<30m)",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.COASTZ",
BurntUmber,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"STRAYLIGHT",
"Straylight determined",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.STRAYLIGHT",
Color.YELLOW,
0.2));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"CLDICE",
"Cloud/Ice determined",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.CLDICE",
Color.WHITE,
0.0));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"COCCOLITH",
"Coccolithophores detected",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.COCCOLITH",
Color.CYAN,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"TURBIDW",
"Turbid water determined",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.TURBIDW",
LightBrown,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"HISOLZEN",
"High solar zenith angle",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.HISOLZEN",
Purple,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"LOWLW",
"Low Lw @ 555nm (possible cloud shadow)",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.LOWLW",
Cornflower,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"CHLFAIL",
"Chlorophyll algorithm failure",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.CHLFAIL",
FailRed,
0.0));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"NAVWARN",
"Navigation suspect",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.NAVWARN",
Color.MAGENTA,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"ABSAER",
"Absorbing Aerosols determined",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.ABSAER",
Color.ORANGE,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"MAXAERITER",
"Maximum iterations reached for NIR correction",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.MAXAERITER",
MediumGray,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"MODGLINT",
"Moderate glint determined",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.MODGLINT",
LightPurple,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"CHLWARN",
"Chlorophyll out-of-bounds (<0.01 or >100 mg m^-3)",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.CHLWARN",
Color.LIGHT_GRAY,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"ATMWARN",
"Atmospheric correction warning; Epsilon out-of-bounds",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.ATMWARN",
Color.MAGENTA,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"SEAICE",
"Sea ice determined",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.SEAICE",
Color.DARK_GRAY,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"NAVFAIL",
"Navigation failure",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.NAVFAIL",
FailRed,
0.0));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"FILTER",
"Insufficient data for smoothing filter",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.FILTER",
Color.LIGHT_GRAY,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"SSTWARN",
"Sea surface temperature suspect",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.SSTWARN",
Color.MAGENTA,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"SSTFAIL",
"Sea surface temperature algorithm failure",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.SSTFAIL",
FailRed,
0.1));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"HIPOL",
"High degree of polariztion determined",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.HIPOL",
Color.PINK,
0.5));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"PRODFAIL",
"One (or more) product algorithms produced a failure",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"l2_flags.PRODFAIL",
FailRed,
0.1));
}
Band QFBandSST = product.getBand("qual_sst");
if (QFBandSST != null) {
// FlagCoding flagCoding = new FlagCoding("SSTFlags");
// product.getFlagCodingGroup().add(flagCoding);
//
// QFBandSST.setSampleCoding(flagCoding);
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Best",
"Highest quality SST retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst == 0",
SeadasFileReader.Cornflower,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Good",
"Good quality SST retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst == 1",
SeadasFileReader.LightPurple,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Questionable",
"Questionable quality SST retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst == 2",
SeadasFileReader.BurntUmber,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Bad",
"Bad quality SST retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst == 3",
SeadasFileReader.FailRed,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"No SST Retrieval",
"No SST retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst == 4",
SeadasFileReader.FailRed,
0.6));
}
Band QFBandSST4 = product.getBand("qual_sst4");
if (QFBandSST4 != null) {
// FlagCoding flagCoding = new FlagCoding("SST4Flags");
// product.getFlagCodingGroup().add(flagCoding);
// QFBandSST4.setSampleCoding(flagCoding);
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Best",
"Highest quality SST4 retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst4 == 0",
SeadasFileReader.Cornflower,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Good",
"Good quality SST4 retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst4 == 1",
SeadasFileReader.LightPurple,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Questionable",
"Questionable quality SST4 retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst4 == 2",
SeadasFileReader.BurntUmber,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"Bad",
"Bad quality SST4 retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst4 == 3",
SeadasFileReader.FailRed,
0.6));
product
.getMaskGroup()
.add(
Mask.BandMathsType.create(
"No SST Retrieval",
"No SST retrieval",
product.getSceneRasterWidth(),
product.getSceneRasterHeight(),
"qual_sst4 == 4",
SeadasFileReader.FailRed,
0.6));
}
}
protected void addBandsToProduct(Product product) {
Debug.assertNotNull(getSourceProduct());
Debug.assertNotNull(product);
for (int i = 0; i < getSourceProduct().getNumBands(); i++) {
Band sourceBand = getSourceProduct().getBandAt(i);
String bandName = sourceBand.getName();
if (isNodeAccepted(bandName)) {
Band destBand;
boolean treatVirtualBandsAsRealBands = false;
if (getSubsetDef() != null && getSubsetDef().getTreatVirtualBandsAsRealBands()) {
treatVirtualBandsAsRealBands = true;
}
// @todo 1 se/se - extract copy of a band or virtual band to create deep clone of band and
// virtual band
if (!treatVirtualBandsAsRealBands && sourceBand instanceof VirtualBand) {
VirtualBand virtualSource = (VirtualBand) sourceBand;
destBand =
new VirtualBand(
bandName,
sourceBand.getDataType(),
getSceneRasterWidth(),
getSceneRasterHeight(),
virtualSource.getExpression());
} else {
destBand =
new Band(
bandName,
sourceBand.getDataType(),
getSceneRasterWidth(),
getSceneRasterHeight());
}
if (sourceBand.getUnit() != null) {
destBand.setUnit(sourceBand.getUnit());
}
if (sourceBand.getDescription() != null) {
destBand.setDescription(sourceBand.getDescription());
}
destBand.setScalingFactor(sourceBand.getScalingFactor());
destBand.setScalingOffset(sourceBand.getScalingOffset());
destBand.setLog10Scaled(sourceBand.isLog10Scaled());
destBand.setSpectralBandIndex(sourceBand.getSpectralBandIndex());
destBand.setSpectralWavelength(sourceBand.getSpectralWavelength());
destBand.setSpectralBandwidth(sourceBand.getSpectralBandwidth());
destBand.setSolarFlux(sourceBand.getSolarFlux());
if (sourceBand.isNoDataValueSet()) {
destBand.setNoDataValue(sourceBand.getNoDataValue());
}
destBand.setNoDataValueUsed(sourceBand.isNoDataValueUsed());
destBand.setValidPixelExpression(sourceBand.getValidPixelExpression());
FlagCoding sourceFlagCoding = sourceBand.getFlagCoding();
IndexCoding sourceIndexCoding = sourceBand.getIndexCoding();
if (sourceFlagCoding != null) {
String flagCodingName = sourceFlagCoding.getName();
FlagCoding destFlagCoding = product.getFlagCodingGroup().get(flagCodingName);
Debug.assertNotNull(
destFlagCoding); // should not happen because flag codings should be already in
// product
destBand.setSampleCoding(destFlagCoding);
} else if (sourceIndexCoding != null) {
String indexCodingName = sourceIndexCoding.getName();
IndexCoding destIndexCoding = product.getIndexCodingGroup().get(indexCodingName);
Debug.assertNotNull(
destIndexCoding); // should not happen because index codings should be already in
// product
destBand.setSampleCoding(destIndexCoding);
} else {
destBand.setSampleCoding(null);
}
if (isFullScene(getSubsetDef()) && sourceBand.isStxSet()) {
copyStx(sourceBand, destBand);
}
product.addBand(destBand);
bandMap.put(destBand, sourceBand);
}
}
for (final Map.Entry<Band, RasterDataNode> entry : bandMap.entrySet()) {
copyImageInfo(entry.getValue(), entry.getKey());
}
}