MinHash alignment process (MHAP pronounced MAP): locality sensitive hashing to detect overlaps and utilities. This is the development branch, please use the latest tagged.

You must have a recent JDK and Apache ANT available. To checkout and build run:

git clone https://github.com/marbl/MHAP.git
cd MHAP
ant

For a quick user-quide, run:

cd target
java -jar mhap-1.6.jar

For the full documentation information please see http://mhap.readthedocs.org/en/