public void testFindNewPublishedPrivate() throws Exception {
initializeData();
Screen screen1NotPublished = createScreen("SDSL TEST1 Not Published");
genericEntityDao.persistEntity(screen1NotPublished);
Screen screen2Published = createScreen("SDSL TEST2 Published");
screen2Published.createScreenResult();
Publication publication = new Publication();
publication.setAuthors("Test Authors");
publication.setJournal("Test Journal");
publication.setTitle("Test Publication Title");
screen2Published.addPublication(publication);
genericEntityDao.persistEntity(screen2Published);
Screen screen3Mutual = createScreen("SDSL screen3Mutual");
screen3Mutual.createScreenResult();
screen3Mutual.setDataSharingLevel(ScreenDataSharingLevel.MUTUAL_SCREENS);
publication = new Publication();
publication.setAuthors("Test Authors x");
publication.setJournal("Test Journal x");
publication.setTitle("Test Publication Title x");
screen3Mutual.addPublication(publication);
genericEntityDao.persistEntity(screen3Mutual);
Screen screen4Private = createScreen("SDSL private");
screen4Private.createScreenResult();
screen4Private.setDataSharingLevel(ScreenDataSharingLevel.PRIVATE);
publication = new Publication();
publication.setAuthors("Test Authors x");
publication.setJournal("Test Journal x");
publication.setTitle("Test Publication Title x");
screen4Private.addPublication(publication);
genericEntityDao.persistEntity(screen4Private);
Screen screenPrivatePublishedTransferred =
createScreen("SDSL screenPrivatePublishedTransferred");
screenPrivatePublishedTransferred.createScreenResult();
screenPrivatePublishedTransferred.setDataSharingLevel(ScreenDataSharingLevel.PRIVATE);
publication = new Publication();
publication.setAuthors("Test Authors x");
publication.setJournal("Test Journal x");
publication.setTitle("Test Publication Title x");
screenPrivatePublishedTransferred.createStatusItem(
new LocalDate(), ScreenStatus.TRANSFERRED_TO_BROAD_INSTITUTE);
screenPrivatePublishedTransferred.addPublication(publication);
genericEntityDao.persistEntity(screenPrivatePublishedTransferred);
Screen screen4Public = createScreen("SDSL screen4Public");
screen4Public.createScreenResult();
screen4Public.setDataSharingLevel(ScreenDataSharingLevel.SHARED);
publication = new Publication();
publication.setAuthors("Test Authors xx");
publication.setJournal("Test Journal xx");
publication.setTitle("Test Publication Title xx");
screen4Public.addPublication(publication);
genericEntityDao.persistEntity(screen4Public);
flushAndClear();
screen2Published = genericEntityDao.reloadEntity(screen2Published);
screen3Mutual = genericEntityDao.reloadEntity(screen3Mutual);
screen4Private = genericEntityDao.reloadEntity(screen4Private);
Set<Screen> publishedScreens =
Sets.newHashSet(
screenDataSharingLevelUpdater.findNewPublishedPrivate(
ScreenType.SMALL_MOLECULE)); // TODO: Test RNAi as well
assertNotNull(publishedScreens);
assertEquals(
Sets.newHashSet(screen2Published, screen3Mutual, screen4Private), publishedScreens);
}
