Exemplos de IndividualAlignmentSummaryMetricsCollector.addRecord em Java

Exemplo n.º 1

Arquivo: AlignmentSummaryMetricsCollector.java Projeto: WimS83/Keats

    public void acceptRecord(final SAMRecordAndReference args) {
      final SAMRecord rec = args.getSamRecord();
      final ReferenceSequence ref = args.getReferenceSequence();

      if (rec.getReadPairedFlag()) {
        if (rec.getFirstOfPairFlag()) {
          firstOfPairCollector.addRecord(rec, ref);
        } else {
          secondOfPairCollector.addRecord(rec, ref);
        }

        pairCollector.addRecord(rec, ref);
      } else {
        unpairedCollector.addRecord(rec, ref);
      }
    }