Detect, analyze, and visualize protein symmetry

• Detect symmetry in biological assemblies
• Detect internal pseudo-symmetry in protein chains
• Visualize results in Jmol

This project requires Java 1.6. The library is configured to build using Apache Maven.

The following dependencies should be automatically resolved by maven:

• BioJava
• Jmol

• View the results when using this code base to analyze all of the PDB

• Symmetry in Biological Assemblies View the symmetry of the biological assembly of

View DemoOrientBioAssembly.java

• Intra-chain symmetry (algorithm name: CE-SYMM) View the internal pseudo-symmetry for

View DemoCeSymm.java