public void totalExport() {
File expf = new File("export");
if (expf.exists()) rmrf(expf);
expf.mkdirs();
for (int sto = 0; sto < storeLocs.size(); sto++) {
try {
String sl =
storeLocs.get(sto).getAbsolutePath().replaceAll("/", "-").replaceAll("\\\\", "-");
File estore = new File(expf, sl);
estore.mkdir();
File log = new File(estore, LIBRARY_NAME);
PrintWriter pw = new PrintWriter(log);
for (int i = 0; i < store.getRowCount(); i++)
if (store.curStore(i) == sto) {
File enc = store.locate(i);
File dec = sec.prepareMainFile(enc, estore, false);
pw.println(dec.getName());
pw.println(store.getValueAt(i, Storage.COL_DATE));
pw.println(store.getValueAt(i, Storage.COL_TAGS));
synchronized (jobs) {
jobs.addLast(expJob(enc, dec));
}
}
pw.close();
} catch (IOException exc) {
exc.printStackTrace();
JOptionPane.showMessageDialog(frm, "Exporting Failed");
return;
}
}
JOptionPane.showMessageDialog(frm, "Exporting to:\n " + expf.getAbsolutePath());
}
public static void createDirectories() {
final String[] dirs = {
Paths.getHomeDirectory(),
Paths.getLogsDirectory(),
Paths.getCacheDirectory(),
Paths.getSettingsDirectory(),
Paths.getScriptsDirectory(),
Paths.getScriptsSourcesDirectory(),
Paths.getScriptsPrecompiledDirectory(),
Paths.getScriptsNetworkDirectory(),
};
for (final String name : dirs) {
final File dir = new File(name);
if (!dir.isDirectory()) {
dir.mkdirs();
}
}
if (Configuration.getCurrentOperatingSystem() == Configuration.OperatingSystem.WINDOWS) {
try {
Runtime.getRuntime()
.exec(
"attrib +H \""
+ new File(Paths.getScriptsNetworkDirectory()).getAbsolutePath()
+ "\"");
} catch (final IOException ignored) {
}
}
}
public void startFile(String logfile) {
File parent = new File(logfile).getParentFile();
if (!parent.isDirectory() && !parent.mkdirs()) {
logger.warning("Could not create log folder: " + parent);
}
Handler fileHandler = new RotatingFileHandler(logfile);
fileHandler.setFormatter(new DateOutputFormatter(FILE_DATE));
logger.addHandler(fileHandler);
}
public File getSequencesDir() {
File dir =
new File(
homeBilder.getPath()
+ File.separator
+ DIR_METADATEN_ROOT
+ File.separator
+ DIR_SEQUENCES);
dir.mkdirs();
return dir;
}
public static String getGarbageDirectory() {
final File dir = new File(Configuration.Paths.getScriptCacheDirectory(), ".java");
if (!dir.exists()) {
dir.mkdirs();
}
String path = dir.getAbsolutePath();
try {
path = URLDecoder.decode(path, "UTF-8");
} catch (final UnsupportedEncodingException ignored) {
}
return path;
}
// Take a tree of files starting in a directory in a zip file
// and copy them to a disk directory, recreating the tree.
private int unpackZipFile(
File inZipFile, String directory, String parent, boolean suppressFirstPathElement) {
int count = 0;
if (!inZipFile.exists()) return count;
parent = parent.trim();
if (!parent.endsWith(File.separator)) parent += File.separator;
if (!directory.endsWith(File.separator)) directory += File.separator;
File outFile = null;
try {
ZipFile zipFile = new ZipFile(inZipFile);
Enumeration zipEntries = zipFile.entries();
while (zipEntries.hasMoreElements()) {
ZipEntry entry = (ZipEntry) zipEntries.nextElement();
String name = entry.getName().replace('/', File.separatorChar);
if (name.startsWith(directory)) {
if (suppressFirstPathElement) name = name.substring(directory.length());
outFile = new File(parent + name);
// Create the directory, just in case
if (name.indexOf(File.separatorChar) >= 0) {
String p = name.substring(0, name.lastIndexOf(File.separatorChar) + 1);
File dirFile = new File(parent + p);
dirFile.mkdirs();
}
if (!entry.isDirectory()) {
System.out.println("Installing " + outFile);
// Copy the file
BufferedOutputStream out = new BufferedOutputStream(new FileOutputStream(outFile));
BufferedInputStream in = new BufferedInputStream(zipFile.getInputStream(entry));
int size = 1024;
int n = 0;
byte[] b = new byte[size];
while ((n = in.read(b, 0, size)) != -1) out.write(b, 0, n);
in.close();
out.flush();
out.close();
// Count the file
count++;
}
}
}
zipFile.close();
} catch (Exception e) {
System.err.println("...an error occured while installing " + outFile);
e.printStackTrace();
System.err.println("Error copying " + outFile.getName() + "\n" + e.getMessage());
return -count;
}
System.out.println(count + " files were installed.");
return count;
}
public static void stringToFile(String file, String string) {
try {
if (file.lastIndexOf('\\') != -1) {
File par = new File(file.substring(0, file.lastIndexOf('\\')));
par.mkdirs();
}
FileWriter fw = new FileWriter(file);
fw.write(string);
fw.flush();
fw.close();
} catch (IOException e) {
System.out.println("Failed to save file.");
}
}
// creaza un nou disk si un nou sistem de fisiere pe acesta
public void newDisk(String diskName) {
try {
File newDisk = new File(System.getProperty("user.dir").toString() + "/" + diskName);
if (newDisk.exists()) {
System.out.println("Unable to create " + newDisk.getAbsolutePath());
} else {
newDisk.mkdirs();
System.out.println("New disk created:" + diskName);
addDiskRefernce(diskName);
currentDiskPath = System.getProperty("user.dir").toString() + "\\" + diskName;
currentPath = currentDiskPath;
}
} finally {
takePath();
}
}
public static void main(final String[] args) {
File logdir = new File(LOG_DIR);
if (!logdir.exists()) logdir.mkdirs();
File log = new File(logdir, "client.log");
// redirect all console output to the file
try {
PrintStream out = new PrintStream(new FileOutputStream(log, true), true);
out.format("[%s] ===== Client started =====%n", timestampf.format(new Date()));
System.setOut(out);
System.setErr(out);
} catch (FileNotFoundException e) {
e.printStackTrace();
}
/* Set up the error handler as early as humanly possible. */
ThreadGroup g = new ThreadGroup("Haven main group");
String ed;
if (!(ed = Utils.getprop("haven.errorurl", "")).equals("")) {
try {
final haven.error.ErrorHandler hg = new haven.error.ErrorHandler(new java.net.URL(ed));
hg.sethandler(
new haven.error.ErrorGui(null) {
public void errorsent() {
hg.interrupt();
}
});
g = hg;
} catch (java.net.MalformedURLException e) {
}
}
Thread main =
new HackThread(
g,
new Runnable() {
public void run() {
main2(args);
}
},
"Haven main thread");
main.start();
}
public void generateInfluenceGraphs(List<String> result) {
DownstreamTree tree =
new DownstreamTree(
travSt,
travExp,
new BranchDataProvider() {
@Override
public Color getColor(String gene, String root) {
double pval = calcPVal(root, Collections.singleton(gene));
String colS = val2Color(pval, calcChangeDirection(root, gene) ? 1 : -1);
String[] c = colS.split(" ");
return new Color(
Integer.parseInt(c[0]), Integer.parseInt(c[1]), Integer.parseInt(c[2]));
}
@Override
public double getThickness(GeneBranch branch, String root) {
Set<String> dwstr = branch.getAllGenes();
double cumPval = calcPVal(root, dwstr);
return Math.min(-Math.log(cumPval), 5);
}
});
String dir = this.dir + dataset.name() + "/";
File d = new File(dir);
if (!d.exists()) d.mkdirs();
assert d.isDirectory();
for (String mut : result) {
GeneBranch g = tree.getTree(mut, downstream.get(mut), depth);
g.trimToMajorPaths(downstream.get(mut));
if (g.selectLeaves(affectedDw.get(mut))) {
if (!affectedDw.get(mut).isEmpty() && affectedDw.get(mut).size() < 6)
RadialInfluenceTree.write(g.copy(true), false, dir + mut + ".svg");
writeTree(g, dir);
}
}
}
public static void storeImage(BufferedImage image, String s) {
String ext;
File f;
try {
ext = s.substring(s.lastIndexOf(".") + 1);
f = new File(s);
f.mkdirs();
} catch (Exception e) {
System.out.println(e);
return;
}
if (!ext.equals("gif") && !ext.equals("jpg") && !ext.equals("png")) {
System.out.println("Cannot write to file: Illegal extension " + ext);
return;
}
try {
ImageIO.write(image, ext, f);
} catch (Exception e) {
System.out.println(e);
}
}
private void cleanup(File directory) {
// Clean up from old installations, removing or renaming files.
// Note that directory is the parent of the CTP directory
// unless the original installation was done by Bill Weadock's
// all-in-one installer for Windows.
// Get a file pointing to the CTP directory.
// This might be the current directory, or
// it might be the CTP child.
File dir;
if (directory.getName().equals("RSNA")) dir = directory;
else dir = new File(directory, "CTP");
// If CTP.jar exists in this directory, it is a really
// old CTP main file - not used anymore
File ctp = new File(dir, "CTP.jar");
if (ctp.exists()) ctp.delete();
// These are old names for the Launcher.jar file
File launcher = new File(dir, "CTP-launcher.jar");
if (launcher.exists()) launcher.delete();
launcher = new File(dir, "TFS-launcher.jar");
if (launcher.exists()) launcher.delete();
// Delete the obsolete CTP-runner.jar file
File runner = new File(dir, "CTP-runner.jar");
if (runner.exists()) runner.delete();
// Delete the obsolete MIRC-copier.jar file
File copier = new File(dir, "MIRC-copier.jar");
if (copier.exists()) copier.delete();
// Rename the old versions of the properties files
File oldprops = new File(dir, "CTP-startup.properties");
File newprops = new File(dir, "CTP-launcher.properties");
File correctprops = new File(dir, "Launcher.properties");
if (oldprops.exists()) {
if (newprops.exists() || correctprops.exists()) oldprops.delete();
else oldprops.renameTo(correctprops);
}
if (newprops.exists()) {
if (correctprops.exists()) newprops.delete();
else newprops.renameTo(correctprops);
}
// Get rid of obsolete startup and shutdown programs
File startup = new File(dir, "CTP-startup.jar");
if (startup.exists()) startup.delete();
File shutdown = new File(dir, "CTP-shutdown.jar");
if (shutdown.exists()) shutdown.delete();
// Get rid of the obsolete linux directory
File linux = new File(dir, "linux");
if (linux.exists()) {
startup = new File(linux, "CTP-startup.jar");
if (startup.exists()) startup.delete();
shutdown = new File(linux, "CTP-shutdown.jar");
if (shutdown.exists()) shutdown.delete();
linux.delete();
}
// clean up the libraries directory
File libraries = new File(dir, "libraries");
if (libraries.exists()) {
// remove obsolete versions of the slf4j libraries
// and the dcm4che-imageio libraries
File[] files = libraries.listFiles();
for (File file : files) {
if (file.isFile()) {
String name = file.getName();
if (name.startsWith("slf4j-") || name.startsWith("dcm4che-imageio-rle")) {
file.delete();
}
}
}
// remove the email subdirectory
File email = new File(libraries, "email");
deleteAll(email);
// remove the xml subdirectory
File xml = new File(libraries, "xml");
deleteAll(xml);
// remove the sftp subdirectory
File sftp = new File(libraries, "sftp");
deleteAll(xml);
// move edtftpj.jar to the ftp directory
File edtftpj = new File(libraries, "edtftpj.jar");
if (edtftpj.exists()) {
File ftp = new File(libraries, "ftp");
ftp.mkdirs();
File ftpedtftpj = new File(ftp, "edtftpj.jar");
edtftpj.renameTo(ftpedtftpj);
}
}
// remove the obsolete xml library under dir
File xml = new File(dir, "xml");
deleteAll(xml);
// remove the dicom profiles so any
// obsolete files will disappear
File profiles = new File(dir, "profiles");
File dicom = new File(profiles, "dicom");
deleteAll(dicom);
dicom.mkdirs();
// Remove the index.html file so it will be rebuilt from
// example-index.html when the system next starts.
File root = new File(dir, "ROOT");
if (root.exists()) {
File index = new File(root, "index.html");
index.delete();
}
}
/** Does install of JRE */
public static void install() {
// Hide the JNLP Clients installer window and show own
Config.getInstallService().hideStatusWindow();
showInstallerWindow();
// Make sure the destination exists.
String path = Config.getInstallService().getInstallPath();
if (Config.isWindowsInstall()) {
String defaultLocation = "C:\\Program Files\\Java\\j2re" + Config.getJavaVersion() + "\\";
File defaultDir = new File(defaultLocation);
if (!defaultDir.exists()) {
defaultDir.mkdirs();
}
if (defaultDir.exists() && defaultDir.canWrite()) {
path = defaultLocation; // use default if you can
}
}
File installDir = new File(path);
if (!installDir.exists()) {
installDir.mkdirs();
if (!installDir.exists()) {
// The installFailed string is only for debugging. No localization needed
installFailed("couldntCreateDirectory", null);
return;
}
}
// Show license if neccesary
enableStep(STEP_LICENSE);
if (!showLicensing()) {
// The installFailed string is only for debugging. No localization needed
installFailed("Licensing was not accepted", null);
}
;
// Make sure that the data JAR is downloaded
enableStep(STEP_DOWNLOAD);
if (!downloadInstallerComponent()) {
// The installFailed string is only for debugging. No localization needed
installFailed("Unable to download data component", null);
}
String nativeLibName = Config.getNativeLibName();
File installerFile = null;
try {
// Load native library into process if found
if (nativeLibName != null && !Config.isSolarisInstall()) {
System.loadLibrary(nativeLibName);
}
// Unpack installer
enableStep(STEP_UNPACK);
String installResource = Config.getInstallerResource();
Config.trace("Installer resource: " + installResource);
installerFile = unpackInstaller(installResource);
// To clean-up downloaded files
Config.trace("Unpacked installer to: " + installerFile);
if (installerFile == null) {
// The installFailed string is only for debugging. No localization needed
installFailed("Could not unpack installer components", null);
return;
}
enableStep(STEP_INSTALL);
setStepText(STEP_INSTALL, Config.getWindowStepWait(STEP_INSTALL));
boolean success = false;
if (Config.isSolarisInstall()) {
success = runSolarisInstaller(path, installerFile);
} else {
success = runWindowsInstaller(path, installerFile);
}
if (!success) {
// The installFailed string is only for debugging. No localization needed
installFailed("Could not run installer", null);
return;
}
} catch (UnsatisfiedLinkError ule) {
// The installFailed string is only for debugging. No localization needed
installFailed("Unable to load library: " + nativeLibName, null);
return;
} finally {
if (installerFile != null) {
installerFile.delete();
}
}
setStepText(STEP_INSTALL, Config.getWindowStep(STEP_INSTALL));
enableStep(STEP_DONE);
String execPath = path + Config.getJavaPath();
Config.trace(execPath);
/** Remove installer JAR from cache */
removeInstallerComponent();
// If we're running anything after 1.0.1 or not on Windows, just call
// finishedInstall. Otherwise, deny ExitVM permission so that we can
// return here and do a reboot. We have to do this because we need to
// call ExtensionInstallerService.finishedInstall(), which registers
// that our extension (the JRE) is installed. Unfortunately pre-1.2 it
// also does not understand that we are requesting a reboot, and calls
// System.exit(). So for pre 1.2 we want to deny the permission to
// exit the VM so we can return here and perform a reboot.
boolean ispre12 = false;
String version = Config.getJavaWSVersion();
// get first tuple
String v = version.substring(version.indexOf('-') + 1);
int i2 = v.indexOf('.');
int v1 = Integer.parseInt(v.substring(0, i2));
// get second tuple
v = v.substring(i2 + 1);
i2 = v.indexOf('.');
if (i2 == -1) i2 = v.indexOf('-');
if (i2 == -1) i2 = v.indexOf('[');
if (i2 == -1) i2 = v.length();
int v2 = Integer.parseInt(v.substring(0, i2));
// are we pre 1.2?
if (v1 < 1 || (v1 == 1 && v2 < 2)) ispre12 = true;
if (Config.isWindowsInstall() && ispre12 && Config.isHopper()) {
// deny ExitVM permission then call finishedInstall
ProtectionDomain pd = (new Object()).getClass().getProtectionDomain();
CodeSource cs = pd.getCodeSource();
AllPermissionExceptExitVM perm = new AllPermissionExceptExitVM();
PermissionCollection newpc = perm.newPermissionCollection();
newpc.add(perm);
// run finishedInstall within the new context which excluded
// just the ExitVM permission
ProtectionDomain newpd = new ProtectionDomain(cs, newpc);
AccessControlContext newacc = new AccessControlContext(new ProtectionDomain[] {newpd});
final String fExecPath = execPath;
try {
AccessController.doPrivileged(
new PrivilegedExceptionAction() {
public Object run() throws SecurityException {
finishedInstall(fExecPath);
return null;
}
},
newacc);
} catch (PrivilegedActionException pae) {
// swallow the exception because we want ExitVM to fail silent
} catch (SecurityException se) {
// swallow the exception because we want ExitVM to fail silent
}
} else {
// just call finished Install
finishedInstall(execPath);
}
if (Config.isWindowsInstall() && WindowsInstaller.IsRebootNecessary()) {
// reboot
if (!WindowsInstaller.askUserForReboot()) System.exit(0);
} else {
System.exit(0);
}
}
protected void saveToFile() {
if (this.fileChooser == null) {
this.fileChooser = new JFileChooser();
this.fileChooser.setCurrentDirectory(new File(Configuration.getUserHomeDirectory()));
}
this.fileChooser.setDialogTitle("Choose Directory to Place Airspaces");
this.fileChooser.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY);
this.fileChooser.setMultiSelectionEnabled(false);
int status = this.fileChooser.showSaveDialog(null);
if (status != JFileChooser.APPROVE_OPTION) return;
final File dir = this.fileChooser.getSelectedFile();
if (dir == null) return;
if (!dir.exists()) {
//noinspection ResultOfMethodCallIgnored
dir.mkdirs();
}
final Iterable<AirspaceEntry> entries = this.getModel().getEntries();
Thread t =
new Thread(
new Runnable() {
public void run() {
try {
java.text.DecimalFormat f = new java.text.DecimalFormat("####");
f.setMinimumIntegerDigits(4);
int counter = 0;
for (AirspaceEntry entry : entries) {
Airspace a = entry.getAirspace();
AirspaceAttributes currentAttribs = a.getAttributes();
a.setAttributes(entry.getAttributes());
String xmlString = a.getRestorableState();
if (xmlString != null) {
try {
PrintWriter of =
new PrintWriter(
new File(
dir,
a.getClass().getName()
+ "-"
+ entry.getName()
+ "-"
+ f.format(counter++)
+ ".xml"));
of.write(xmlString);
of.flush();
of.close();
} catch (Exception e) {
e.printStackTrace();
}
}
a.setAttributes(currentAttribs);
}
} finally {
SwingUtilities.invokeLater(
new Runnable() {
public void run() {
setEnabled(true);
getApp().setCursor(null);
getApp().getWwd().redraw();
}
});
}
}
});
this.setEnabled(false);
getApp().setCursor(new Cursor(Cursor.WAIT_CURSOR));
t.start();
}
private static void init() {
final File basePath = basePath();
basePath.mkdirs();
final File namesFile = new File(basePath, "names.dat");
final File attributesFile = new File(basePath, "attrib.dat");
final File contentsFile = new File(basePath, "content.dat");
final File recordsFile = new File(basePath, "records.dat");
if (!namesFile.exists()) {
invalidateIndex();
}
try {
if (getCorruptionMarkerFile().exists()) {
invalidateIndex();
throw new IOException("Corruption marker file found");
}
PagedFileStorage.StorageLockContext storageLockContext =
new PagedFileStorage.StorageLock(false).myDefaultStorageLockContext;
myNames = new PersistentStringEnumerator(namesFile, storageLockContext);
myAttributes = new Storage(attributesFile.getCanonicalPath(), REASONABLY_SMALL);
myContents =
new RefCountingStorage(
contentsFile.getCanonicalPath(),
CapacityAllocationPolicy
.FIVE_PERCENT_FOR_GROWTH); // sources usually zipped with 4x ratio
boolean aligned = PagedFileStorage.BUFFER_SIZE % RECORD_SIZE == 0;
assert aligned; // for performance
myRecords =
new ResizeableMappedFile(
recordsFile, 20 * 1024, storageLockContext, PagedFileStorage.BUFFER_SIZE, aligned);
if (myRecords.length() == 0) {
cleanRecord(0); // Clean header
cleanRecord(1); // Create root record
setCurrentVersion();
}
if (getVersion() != VERSION) {
throw new IOException("FS repository version mismatch");
}
if (myRecords.getInt(HEADER_CONNECTION_STATUS_OFFSET) != SAFELY_CLOSED_MAGIC) {
throw new IOException("FS repository wasn't safely shut down");
}
markDirty();
scanFreeRecords();
} catch (Exception e) { // IOException, IllegalArgumentException
LOG.info(
"Filesystem storage is corrupted or does not exist. [Re]Building. Reason: "
+ e.getMessage());
try {
closeFiles();
boolean deleted = FileUtil.delete(getCorruptionMarkerFile());
deleted &= deleteWithSubordinates(namesFile);
deleted &= AbstractStorage.deleteFiles(attributesFile.getCanonicalPath());
deleted &= AbstractStorage.deleteFiles(contentsFile.getCanonicalPath());
deleted &= deleteWithSubordinates(recordsFile);
if (!deleted) {
throw new IOException("Cannot delete filesystem storage files");
}
} catch (final IOException e1) {
final Runnable warnAndShutdown =
new Runnable() {
@Override
public void run() {
if (ApplicationManager.getApplication().isUnitTestMode()) {
//noinspection CallToPrintStackTrace
e1.printStackTrace();
} else {
final String message =
"Files in "
+ basePath.getPath()
+ " are locked.\n"
+ ApplicationNamesInfo.getInstance().getProductName()
+ " will not be able to start up.";
if (!ApplicationManager.getApplication().isHeadlessEnvironment()) {
JOptionPane.showMessageDialog(
JOptionPane.getRootFrame(),
message,
"Fatal Error",
JOptionPane.ERROR_MESSAGE);
} else {
//noinspection UseOfSystemOutOrSystemErr
System.err.println(message);
}
}
Runtime.getRuntime().halt(1);
}
};
if (EventQueue.isDispatchThread()) {
warnAndShutdown.run();
} else {
//noinspection SSBasedInspection
SwingUtilities.invokeLater(warnAndShutdown);
}
throw new RuntimeException("Can't rebuild filesystem storage ", e1);
}
init();
}
}
public Ssys3() {
store = new Storage();
tableSorter = new TableRowSorter<Storage>(store);
jobs = new LinkedList<String>();
makeGUI();
frm.setSize(800, 600);
frm.addWindowListener(
new WindowListener() {
public void windowActivated(WindowEvent evt) {}
public void windowClosed(WindowEvent evt) {
try {
System.out.println("joining EDT's");
for (EDT edt : encryptDecryptThreads) {
edt.weakStop();
try {
edt.join();
System.out.println(" - joined");
} catch (InterruptedException e) {
System.out.println(" - Not joined");
}
}
System.out.println("saving storage");
store.saveAll(tempLoc);
} catch (IOException e) {
e.printStackTrace();
System.err.println(
"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n\nFailed to save properly\n\n!!!!!!!!!!!!!!!!!!!!!!!!!");
System.exit(1);
}
clean();
System.exit(0);
}
public void windowClosing(WindowEvent evt) {
windowClosed(evt);
}
public void windowDeactivated(WindowEvent evt) {}
public void windowDeiconified(WindowEvent evt) {}
public void windowIconified(WindowEvent evt) {}
public void windowOpened(WindowEvent evt) {}
});
ImageIcon ico = new ImageIcon(ICON_NAME);
frm.setIconImage(ico.getImage());
frm.setLocationRelativeTo(null);
frm.setVisible(true);
// load config
storeLocs = new ArrayList<File>();
String ossl = "openssl";
int numThreadTemp = 2;
boolean priorityDecryptTemp = true;
boolean allowExportTemp = false;
boolean checkImportTemp = true;
try {
Scanner sca = new Scanner(CONF_FILE);
while (sca.hasNextLine()) {
String ln = sca.nextLine();
if (ln.startsWith(CONF_SSL)) {
ossl = ln.substring(CONF_SSL.length());
} else if (ln.startsWith(CONF_THREAD)) {
try {
numThreadTemp = Integer.parseInt(ln.substring(CONF_THREAD.length()));
} catch (Exception exc) {
// do Nothing
}
} else if (ln.equals(CONF_STORE)) {
while (sca.hasNextLine()) storeLocs.add(new File(sca.nextLine()));
} else if (ln.startsWith(CONF_PRIORITY)) {
try {
priorityDecryptTemp = Boolean.parseBoolean(ln.substring(CONF_PRIORITY.length()));
} catch (Exception exc) {
// do Nothing
}
} else if (ln.startsWith(CONF_EXPORT)) {
try {
allowExportTemp = Boolean.parseBoolean(ln.substring(CONF_EXPORT.length()));
} catch (Exception exc) {
// do Nothing
}
} else if (ln.startsWith(CONF_CONFIRM)) {
try {
checkImportTemp = Boolean.parseBoolean(ln.substring(CONF_CONFIRM.length()));
} catch (Exception exc) {
// do Nothing
}
}
}
sca.close();
} catch (IOException e) {
}
String osslWorks = OpenSSLCommander.test(ossl);
while (osslWorks == null) {
ossl =
JOptionPane.showInputDialog(
frm,
"Please input the command used to run open ssl\n We will run \"<command> version\" to confirm\n Previous command: "
+ ossl,
"Find open ssl",
JOptionPane.OK_CANCEL_OPTION);
if (ossl == null) {
System.err.println("Refused to provide openssl executable location");
System.exit(1);
}
osslWorks = OpenSSLCommander.test(ossl);
if (osslWorks == null)
JOptionPane.showMessageDialog(
frm, "Command " + ossl + " unsuccessful", "Unsuccessful", JOptionPane.ERROR_MESSAGE);
}
if (storeLocs.size() < 1)
JOptionPane.showMessageDialog(
frm,
"Please select an initial sotrage location\nIf one already exists, or there are more than one, please select it");
while (storeLocs.size() < 1) {
JFileChooser jfc = new JFileChooser();
jfc.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY);
if (jfc.showOpenDialog(frm) != JFileChooser.APPROVE_OPTION) {
System.err.println("Refused to provide an initial store folder");
System.exit(1);
}
File sel = jfc.getSelectedFile();
if (sel.isDirectory()) storeLocs.add(sel);
}
numThreads = numThreadTemp;
priorityExport = priorityDecryptTemp;
allowExport = allowExportTemp;
checkImports = checkImportTemp;
try {
PrintWriter pw = new PrintWriter(CONF_FILE);
pw.println(CONF_SSL + ossl);
pw.println(CONF_THREAD + numThreads);
pw.println(CONF_PRIORITY + priorityExport);
pw.println(CONF_EXPORT + allowExport);
pw.println(CONF_CONFIRM + checkImports);
pw.println(CONF_STORE);
for (File fi : storeLocs) {
pw.println(fi.getAbsolutePath());
}
pw.close();
} catch (IOException e) {
System.err.println("Failed to save config");
}
File chk = null;
for (File fi : storeLocs) {
File lib = new File(fi, LIBRARY_NAME);
if (lib.exists()) {
chk = lib;
// break;
}
}
char[] pass = null;
if (chk == null) {
JOptionPane.showMessageDialog(
frm,
"First time run\n Create your password",
"Create Password",
JOptionPane.INFORMATION_MESSAGE);
char[] p1 = askPassword();
char[] p2 = askPassword();
boolean same = p1.length == p2.length;
for (int i = 0; i < Math.min(p1.length, p2.length); i++) {
if (p1[i] != p2[i]) same = false;
}
if (same) {
JOptionPane.showMessageDialog(
frm, "Password created", "Create Password", JOptionPane.INFORMATION_MESSAGE);
pass = p1;
} else {
JOptionPane.showMessageDialog(
frm, "Passwords dont match", "Create Password", JOptionPane.ERROR_MESSAGE);
System.exit(1);
}
} else {
pass = askPassword();
}
sec = OpenSSLCommander.getCommander(chk, pass, ossl);
if (sec == null) {
System.err.println("Wrong Password");
System.exit(1);
}
store.useSecurity(sec);
store.useStorage(storeLocs);
tempLoc = new File("temp");
if (!tempLoc.exists()) tempLoc.mkdirs();
// load stores
try {
store.loadAll(tempLoc);
store.fireTableDataChanged();
} catch (IOException e) {
System.err.println("Storage loading failure");
System.exit(1);
}
needsSave = false;
encryptDecryptThreads = new EDT[numThreads];
for (int i = 0; i < encryptDecryptThreads.length; i++) {
encryptDecryptThreads[i] = new EDT(i);
encryptDecryptThreads[i].start();
}
updateStatus();
txaSearch.grabFocus();
}
// The private constructor
private PM_Configuration(String[] args) {
File fileEinstellungen = null;
File directoryHomeBilder = null;
// --------------------------------
// �bernehmen Start-Parameter
// --------------------------------
int c;
Getopt g = new Getopt("photo-manager", args, "e:b:i:n::d::");
String arg;
while ((c = g.getopt()) != -1) {
switch (c) {
case 'e':
arg = g.getOptarg();
fileEinstellungen = (arg == null) ? null : new File(arg);
break;
case 'b':
arg = g.getOptarg();
directoryHomeBilder = (arg == null) ? null : new File(arg);
break;
case 'n': // batch
batch = true;
break;
// case 'd': // daemon und batch
// demon = true;
// batch = true;
// break;
case 'i':
arg = g.getOptarg();
if (arg != null) {
importFiles.add(new File(arg));
}
break;
}
}
// Jetzt noch die ohne Options.Das sind dann Import-Files
for (int i = g.getOptind(); i < args.length; i++) {
importFiles.add(new File(args[i]));
}
// --------------------------------------------------------------
// Reihenfolge:
// 1. a. -e Parameter auswerten
// b. nigefu: .photo-manager/pm_einstellungen.xml suchen
// c. nigefu: Locale prompten und .photo-manager/pm_einstellungen.xml
// neu anlegen
// 2. a. -b Parameter auswerten
// b. nigefu: Eintrag in .photo-manager/pm_einstellungen.xml suchen
// c. nigefu: prompten (ERROR wenn batch)
// 3. Wenn in .photo-manager/pm_einstellungen.xml
// Bilder-Dir nicht eingetragen, dann dort eintragen.
// (wenn vorhanden, nicht �berschreiben)
// ------------------------------------------------------------------
// --------------------------------------------------------------------
// (1) pm_einstellungen.xml und locale ermitteln
// --------------------------------------------------------------------
if (fileEinstellungen != null && fileEinstellungen.isFile()) {
// (1.a.) -e Parameter vorhanden:
// open und lesen locale
xmlFile = fileEinstellungen;
openDocument(OPEN_READ_ONLY);
locale = getLocale();
if (locale == null) {
locale = (new PM_WindowDialogGetLocale().getLocale());
setLocale(locale);
writeDocument();
}
} else {
// (1.b.) -e nicht angegeben
fileEinstellungen = new File(PM_Utils.getConfigDir() + File.separator + FILE_EINSTELLUNGEN);
if (fileEinstellungen.isFile()) {
// (1.b) in .photo-manager/pm_einstellungen.xml Datei gefunden
xmlFile = fileEinstellungen;
openDocument(OPEN_READ_ONLY);
locale = getLocale();
if (locale == null) {
locale = (new PM_WindowDialogGetLocale().getLocale());
setLocale(locale);
writeDocument();
}
} else {
// pm_einstellungen.xml nigefu:
// locale prompten und pm_einstellungen neu anlegen
locale = (new PM_WindowDialogGetLocale().getLocale());
xmlFile = fileEinstellungen;
rootTagName = rootTag;
openDocument(OPEN_CREATE);
setLocale(locale);
writeDocument();
}
}
// ---------------------------------------------------------------
// (2) Bilder Dir ermitteln
// ---------------------------------------------------------------
if (directoryHomeBilder != null && directoryHomeBilder.isDirectory()) {
// --- es wurde -b <top level directory> angegeben
homeBilder = directoryHomeBilder;
setHomeBilder(homeBilder.getPath());
writeDocument();
} else {
// jetzt muss homeBilder aus der xml-Datei gelesen werden.
// Wenn nigefu., dann prompten und eingtragen
homeBilder = getHomeFile();
if (homeBilder == null || homeBilder.isDirectory() == false) {
if (batch) {
System.out.println("ERROR: batch kein TLPD gefunden");
System.out.println("abnormal end");
System.exit(0);
}
PM_MSG.setResourceBundle(locale);
PM_WindowGetTLPD sp = new PM_WindowGetTLPD();
homeBilder = sp.getResult();
if (homeBilder == null) {
setLocale(locale);
writeDocument();
System.out.println("abnormal end (no TLPD)");
System.exit(0);
}
setLocale(locale);
setHomeBilder(homeBilder.getPath());
writeDocument();
}
}
// -----------------------------------------------------
// Jetzt gibt es:
// ein korrektes xmlFile mit einem homeBilder Eintrag
// homeBilder ist korrekt versorgt
// --------------------------------------------------------
// System.out.println("Locale = "+ locale);
PM_MSG.setResourceBundle(locale);
setAllPrinter();
setPrinterFormat();
setDateFromTo();
setPrefetch();
setSlideshow();
setBackup();
setSequences();
setMpeg();
// homeLuceneDB in -e nicht eingetragn
if (homeLuceneDB == null) {
homeLuceneDB =
new File(
homeBilder.getPath()
+ File.separator
+ DIR_METADATEN_ROOT
+ File.separator
+ DIR_LUCENE_DB);
homeLuceneDB.mkdirs();
}
// Temp-Dir nicht vorhanden
if (homeTemp == null) {
homeTemp = new File(homeBilder.getPath() + File.separator + DIR_PM_TEMP); // "pm_temp");
homeTemp.mkdirs();
}
// Externe-Programme nicht vorhanden
if (homeExtProgramme == null) {
homeExtProgramme =
new File(PM_Utils.getConfigDir() + File.separator + FILE_EXTERNE_PROGRAMME);
}
// InitValues nicht vorhanden
if (homeInitValues == null) {
homeInitValues = new File(PM_Utils.getConfigDir() + File.separator + FILE_INIT_VALUES);
}
}
private void process() {
int width = Integer.parseInt(xres.getText());
int height = Integer.parseInt(yres.getText());
boolean preserveAspect = aspect.isSelected();
Color bg = new Color(red.getValue(), green.getValue(), blue.getValue());
String outDir = output.getText();
String suffix = ((String) format.getSelectedItem()).toLowerCase();
String preText = prepend.getText();
String appText = append.getText();
int scaleType = -1;
String alg = (String) algorithm.getSelectedItem();
if (alg.equals("Smooth")) scaleType = Image.SCALE_SMOOTH;
else if (alg.equals("Standard")) scaleType = Image.SCALE_DEFAULT;
else if (alg.equals("Fast")) scaleType = Image.SCALE_FAST;
else if (alg.equals("Replicate")) scaleType = Image.SCALE_REPLICATE;
else if (alg.equals("Area averaging")) {
scaleType = Image.SCALE_AREA_AVERAGING;
}
DefaultListModel model = (DefaultListModel) list.getModel();
int size = model.size();
progress.setValue(0);
progress.setMaximum(4 * size);
for (int i = 0; i < size; i++) {
ThumbFile tf = (ThumbFile) model.elementAt(i);
list.setSelectedValue(tf, true);
String tail = " (" + (i + 1) + " of " + size + ")";
progress.setValue(4 * i);
progress.setString("Reading" + tail);
// construct input and output filenames
String inFile = tf.getPath();
String outFile = outDir + SLASH + tf.getName();
int ndx = outFile.lastIndexOf(SLASH);
String s1 = outFile.substring(0, ndx + SLASH.length());
String s2 = outFile.substring(ndx + SLASH.length());
int dot_ndx = s2.lastIndexOf(".");
if (dot_ndx >= 0) s2 = s2.substring(0, dot_ndx);
// make the thumbnail file name
outFile = s1 + preText + s2 + appText + "." + suffix;
// read in the file to an image
BufferedImage image = null;
try {
image = ImageIO.read(new File(inFile));
} catch (IOException exc) {
exc.printStackTrace();
}
progress.setValue(4 * i + 1);
progress.setString("Resizing" + tail);
// resize image
int w, h;
if (preserveAspect) {
int ow = image.getWidth();
int oh = image.getHeight();
double oasp = (double) ow / oh;
double tasp = (double) width / height;
if (oasp > tasp) {
w = width;
h = (int) (w / oasp);
} else {
h = height;
w = (int) (oasp * h);
}
} else {
w = width;
h = height;
}
Image resized = image.getScaledInstance(w, h, scaleType);
progress.setValue(4 * i + 2);
progress.setString("Painting" + tail);
// create thumbnail
BufferedImage thumb = new BufferedImage(width, height, BufferedImage.TYPE_INT_RGB);
Graphics2D g2d = thumb.createGraphics();
g2d.setColor(bg);
g2d.fillRect(0, 0, width, height);
g2d.drawImage(resized, (width - w) / 2, (height - h) / 2, this);
g2d.dispose();
progress.setValue(4 * i + 3);
progress.setString("Writing" + tail);
// save thumbnail to disk
File out = new File(outFile);
File parent = out.getParentFile();
if (parent != null && !parent.exists()) parent.mkdirs();
try {
ImageIO.write(thumb, suffix, out);
} catch (IOException exc) {
exc.printStackTrace();
}
}
list.setSelectedIndices(new int[0]);
progress.setValue(4 * size);
progress.setString("Complete");
}
/** @param args the command line arguments */
public static void main(String[] args) {
// TODO code application logic here
hilos = new HashMap<String, Thread>();
StringTokenizer token = new StringTokenizer(OS, " ");
OS = token.nextToken().toLowerCase();
token = null;
if (OS.equals("windows")) {
// Creamos las variables
StringBuilder path = new StringBuilder(System.getProperty("user.home")); // Path del sistema
path.append("\\AppData\\Roaming\\Data"); // Agregamos los datos
String name = "data.cfg", booleano = "boolean.txt"; // Nombre de ficheros de datos
String pss = "My Pass Phrase"; // Nombre de frase pass
String boo = path.toString() + "\\" + booleano; // Path del fichero booleano
File fich = new File(path.toString());
fich.mkdirs();
path.append("\\").append(name);
File fichero = new File(boo);
// Controlamos si es la primera vez que se ejecuta y si hay registro o no
if (fichero.exists()) {
try {
// Leemos el fichero si existe
BufferedReader bf = new BufferedReader(new FileReader(fichero));
boo = bf.readLine();
} catch (IOException e) {
}
if (boo.equals("true")) {
// Si en el fichero hay un true, significa que ya se ha registrado y abrimos la Vista2
Vista2 vista = new Vista2(pss);
vista.setIconImage(
new ImageIcon(
System.getProperty("user.home") + "\\AppData\\Roaming\\.minecraft\\5547.png")
.getImage());
vista.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
vista.setTitle(title + " " + version);
vista.setLocationRelativeTo(null);
vista.setVisible(true);
vista.pack();
} else {
// Sino, no se ha registrado, y abrimos la Vista
Vista.main(path.toString(), pss, fichero.getAbsolutePath());
}
} else {
// Si no existe el fichero, lo creamos y escribimos en él false
try {
fichero.createNewFile();
PrintWriter pw = new PrintWriter(fichero);
pw.print("false");
pw.close();
} catch (IOException e) {
}
// Abrimos Vista
Vista.main(path.toString(), pss, fichero.getAbsolutePath());
}
} else if (OS.equals("linux")) {
// Creamos las variables
StringBuilder path = new StringBuilder(System.getProperty("user.home")); // Path del sistema
path.append("/Data"); // Agregamos los datos
String name = "data.cfg", booleano = "boolean.txt"; // Nombre de ficheros de datos
String pss = "My Pass Phrase"; // Nombre de frase pass
String boo = path.toString() + "/" + booleano; // Path del fichero booleano
File fich = new File(path.toString());
fich.mkdirs();
path.append("/").append(name);
File fichero = new File(boo);
// Controlamos si es la primera vez que se ejecuta y si hay registro o no
if (fichero.exists()) {
try {
// Leemos el fichero si existe
BufferedReader bf = new BufferedReader(new FileReader(fichero));
boo = bf.readLine();
} catch (IOException e) {
}
if (boo.equals("true")) {
// Si en el fichero hay un true, significa que ya se ha registrado y abrimos la Vista2
Vista2 vista = new Vista2(pss);
vista.setIconImage(
new ImageIcon(System.getProperty("user.home") + "/.minecraft/5547.png").getImage());
vista.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
vista.setTitle(title + " " + version);
vista.setLocationRelativeTo(null);
vista.setVisible(true);
vista.pack();
} else {
// Sino, no se ha registrado, y abrimos la Vista
Vista.main(path.toString(), pss, fichero.getAbsolutePath());
}
} else {
// Si no existe el fichero, lo creamos y escribimos en él false
try {
fichero.createNewFile();
PrintWriter pw = new PrintWriter(fichero);
pw.print("false");
pw.close();
} catch (IOException e) {
}
// Abrimos Vista
Vista.main(path.toString(), pss, fichero.getAbsolutePath());
}
}
}
/** Runs this thread. */
public void run() {
CommonFileChooser file_chooser = new CommonFileChooser();
file_chooser.setDialogTitle("Choose a directory.");
file_chooser.setMultiSelectionEnabled(false);
file_chooser.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY);
if (file_chooser.showSaveDialog(pane) == JFileChooser.APPROVE_OPTION) {
try {
File directory = file_chooser.getSelectedFile();
directory.mkdirs();
// Outputs the variability XML file.
String path = FileManager.unitePath(directory.getAbsolutePath(), "package.xml");
File file = new File(path);
if (file.exists()) {
String message = "Overwrite to " + file.getPath() + " ?";
if (0
!= JOptionPane.showConfirmDialog(
pane, message, "Confirmation", JOptionPane.YES_NO_OPTION)) {
return;
}
}
XmlVariabilityHolder holder = new XmlVariabilityHolder();
Variability[] records = getSelectedRecords();
for (int i = 0; i < records.length; i++) {
XmlVariability variability = new XmlVariability(records[i]);
holder.addVariability(variability);
}
holder.write(file);
// Copies the report XML document files.
Hashtable hash_xml = new Hashtable();
for (int i = 0; i < records.length; i++) {
XmlMagRecord[] mag_records = records[i].getMagnitudeRecords();
for (int j = 0; j < mag_records.length; j++)
hash_xml.put(mag_records[j].getImageXmlPath(), this);
}
Vector failed_list = new Vector();
Enumeration keys = hash_xml.keys();
while (keys.hasMoreElements()) {
String xml_path = (String) keys.nextElement();
try {
File src_file = desktop.getFileManager().newFile(xml_path);
File dst_file =
new File(FileManager.unitePath(directory.getAbsolutePath(), xml_path));
if (dst_file.exists() == false) FileManager.copy(src_file, dst_file);
} catch (Exception exception) {
failed_list.addElement(xml_path);
}
}
if (failed_list.size() > 0) {
String header = "Failed to copy the following XML files:";
MessagesDialog dialog = new MessagesDialog(header, failed_list);
dialog.show(pane, "Error", JOptionPane.ERROR_MESSAGE);
}
// Copies the image files.
failed_list = new Vector();
keys = hash_xml.keys();
while (keys.hasMoreElements()) {
path = (String) keys.nextElement();
try {
XmlInformation info =
XmlReport.readInformation(desktop.getFileManager().newFile(path));
path = info.getImage().getContent();
File src_file = desktop.getFileManager().newFile(path);
File dst_file = new File(FileManager.unitePath(directory.getAbsolutePath(), path));
if (dst_file.exists() == false) FileManager.copy(src_file, dst_file);
} catch (Exception exception) {
failed_list.addElement(path);
}
}
if (failed_list.size() > 0) {
String header = "Failed to copy the following image files:";
MessagesDialog dialog = new MessagesDialog(header, failed_list);
dialog.show(pane, "Error", JOptionPane.ERROR_MESSAGE);
}
// Creates the sub catalog database.
try {
DiskFileSystem file_system =
new DiskFileSystem(
new File(
directory.getAbsolutePath(),
net.aerith.misao.pixy.Properties.getDatabaseDirectoryName()));
CatalogDBManager new_manager = new GlobalDBManager(file_system).getCatalogDBManager();
Hashtable hash_stars = new Hashtable();
for (int i = 0; i < records.length; i++) {
CatalogStar star = records[i].getStar();
CatalogDBReader reader =
new CatalogDBReader(desktop.getDBManager().getCatalogDBManager());
StarList list = reader.read(star.getCoor(), 0.5);
for (int j = 0; j < list.size(); j++) {
CatalogStar s = (CatalogStar) list.elementAt(j);
hash_stars.put(s.getOutputString(), s);
}
}
keys = hash_stars.keys();
while (keys.hasMoreElements()) {
String string = (String) keys.nextElement();
CatalogStar star = (CatalogStar) hash_stars.get(string);
new_manager.addElement(star);
}
} catch (Exception exception) {
String message = "Failed to create sub catalog database.";
JOptionPane.showMessageDialog(pane, message, "Error", JOptionPane.ERROR_MESSAGE);
}
String message = "Completed.";
JOptionPane.showMessageDialog(pane, message);
} catch (IOException exception) {
String message = "Failed.";
JOptionPane.showMessageDialog(pane, message, "Error", JOptionPane.ERROR_MESSAGE);
}
}
}
