public void drawScene(Graphics g) {
boolean darker = false;
int halfwidth = size().width / 2;
int halfheight = size().height / 2;
for (int i = 0; i < npoint; i++) {
SequencePoint sp = (SequencePoint) points.elementAt(i);
int x = (int) ((float) (sp.coord[0] - centre[0]) * scale) + halfwidth;
int y = (int) ((float) (sp.coord[1] - centre[1]) * scale) + halfheight;
float z = sp.coord[1] - centre[2];
if (sp.sequence instanceof DrawableSequence) {
if (((DrawableSequence) sp.sequence).color == Color.black) {
g.setColor(Color.white);
} else {
g.setColor(((DrawableSequence) sp.sequence).color);
}
} else {
g.setColor(Color.red);
}
if (av != null) {
if (av.getSelection().contains(((SequencePoint) points.elementAt(i)).sequence)) {
g.setColor(Color.gray);
}
}
if (z < 0) {
g.setColor(g.getColor().darker());
}
g.fillRect(x - 3, y - 3, 6, 6);
g.setColor(Color.red);
}
// //Now the rectangle
// if (rectx2 != -1 && recty2 != -1) {
// g.setColor(Color.white);
//
// g.drawRect(rectx1,recty1,rectx2-rectx1,recty2-recty1);
// }
}
public void drawBackground(Graphics g, Color col) {
g.setColor(col);
g.fillRect(0, 0, prefsize.width, prefsize.height);
}