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Eureka!'s clinical phenotyping engine
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${project.name} ${project.version} -- A Temporal Query Framework for Clinical Databases Department of Biomedical Informatics, ${project.organization.name} OVERVIEW ${project.description} WHAT'S NEW Version 2.3 now requires Java 7 compatibility. Ability to search for propositions from knowledge sources was added. A new module for using BioPortal as a knowledge source was added. Version 2.2 eliminates the need to run separate queries to hook up references between propositions, significantly reducing the number of quries generated and execution time. Version 2.0.3 includes the following new features and changes: * We added a new abstraction type called compound low-level abstraction. This lets you infer abstract parameters from one or more other low-level abstractions or compound low-level abstractions. * We made toString()'s behavior more uniform across the framework. We use the Apache ToStringBuilder and friends in most places. * We moved the packages to our new public Maven repository (see below). * Various other bug fixes. Note that Protempa's public APIs are subject to change. A stable ABI will be part of a future release. REQUIREMENTS The current version is known to work with Oracle Java 7. It is expected to work with OpenJDK 7 as well. Protempa uses the Maven build system, available from http://maven.apache.org. You must install maven, if you do not already have it, to work with the source code. We use Maven 3. INSTALLATION The easiest way to get ${project.name} is using Maven. It is available from the ${project.distributionManagement.repository.url} repository. Use the following dependency declaration: <dependency> <groupId>${project.groupId}</groupId> <artifactId>${project.artifactId}</artifactId> <version>${project.version}</version> </dependency> It is also available in tarball and zip file formats from ${project.url}. Please see the technical documentation linked below for detailed instructions on what the framework does and how to use it. CONTACTING US Please send an email to help@eurekaclinical.org for support or questions. LICENSING ${project.name} is freely available as open source under the Apache License, Version 2.0. A copy of the license is in the LICENSE file provided in this distribution. ${project.name} is Copyright (C) ${project.inceptionYear}-2015 ${project.organization.name}. MORE INFORMATION Please see ${project.url} for technical documentation and more information.
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