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An implementation of spatial language extensions to Kappa
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DemonSoftUK/SpatialKappa-PSD2
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<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"> <html> <head> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"> <title>SpatialKappa Readme</title> </head> <body> <h3 style="text-align: center;">SpatialKappa Readme</h3> <p style="text-align: center;">14 September 2012</p> <p style="text-align: center;">Copyright © 2012 DemonSoft.org <<a href="http://www.demonsoft.org/">http://www.demonsoft.org/</a>></p> <h4>INTRODUCTION</h4> <p>This project contains an implementation of a syntactic extension of Kappa to allow expression of location and transport in models. A user manual is available <a href="https://github.com/donal-s/SpatialKappa/downloads">here</a>.</p> <p>Feel free to add bug reports or feature requests <a href="https://github.com/donal-s/SpatialKappa/issues">here</a>.</p> <h4>LICENSE</h4> <p>This project is licenced under the GNU Lesser General Public Licence Version 3 (LGPLv3), included as <<a href="LICENSE.html">LICENSE.html</a>>. Included third party libraries are released under their respective licences, listed below:</p> <table style="border: groove;"> <tr> <th>Library</th> <th>Home site</th> <th>License</th> </tr> <tr> <td>Antlr v3.2</td> <td><a href="http://www.antlr.org">http://www.antlr.org</a></td> <td><a href="http://www.antlr.org/license.html">http://www.antlr.org/license.html</a></td> </tr> <tr> <td>jlfgr v1.0</td> <td><a href="http://java.sun.com/developer/techDocs/hi/repository/">http://java.sun.com/developer/techDocs/hi/repository/</a></td> <td>Included in archive</td> </tr> <tr> <td>commons io v1.4</td> <td><a href="http://commons.apache.org/io/">http://commons.apache.org/io/</a></td> <td><a href="http://commons.apache.org/io/license.html">http://commons.apache.org/io/license.html</a></td> </tr> <tr> <td>jcommon v1.0.16</td> <td><a href="http://www.jfree.org/jcommon/">http://www.jfree.org/jcommon/</a></td> <td><a href="http://www.gnu.org/licenses/lgpl.html">http://www.gnu.org/licenses/lgpl.html</a></td> </tr> <tr> <td>jfreechart v1.0.13</td> <td><a href="http://www.jfree.org/jfreechart/">http://www.jfree.org/jfreechart/</a></td> <td><a href="http://www.gnu.org/licenses/lgpl.html">http://www.gnu.org/licenses/lgpl.html</a></td> </tr> <tr> <td>EasyMock v3.0</td> <td><a href="http://easymock.org/">http://easymock.org/</a></td> <td><a href="http://easymock.org/License.html">http://easymock.org/License.html</a></td> </tr> <tr> <td>CgLib v2.2</td> <td><a href="http://cglib.sourceforge.net/">http://cglib.sourceforge.net/</a></td> <td><a href="http://www.apache.org/foundation/licence-FAQ.html">http://www.apache.org/foundation/licence-FAQ.html</a></td> </tr> <tr> <td>Objenesis v1.2</td> <td><a href="http://objenesis.googlecode.com/svn/docs/index.html">http://objenesis.googlecode.com/svn/docs/index.html</a></td> <td><a href="http://objenesis.googlecode.com/svn/docs/license.html">http://objenesis.googlecode.com/svn/docs/license.html</a></td> </tr> <tr> <td>ASM v3.3.1</td> <td><a href="http://asm.ow2.org/index.html">http://asm.ow2.org/index.html</a></td> <td><a href="http://asm.ow2.org/license.html">http://asm.ow2.org/license.html</a></td> </tr> </table> <h4>ACKNOWLEDGEMENTS</h4> The development of Spatial Kappa was funded in part by <a href="http://www.csbe.ed.ac.uk/">SynthSys</a>. SynthSys is a Centre for Integrative Systems Biology (CISB) funded by BBSRC and EPSRC, reference BB/D019621/1. <h4>DISCLAIMER</h4> <p>THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</p> </body> </html>
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