/**
* \brief Add the total concentration of an agent on received grid
*
* <p>Add the total concentration of an agent on received grid
*
* @param aSpG Spatial grid used to sum total mass
*/
public void fitMassOnGrid(SpatialGrid aSpG) {
if (isDead) return;
double value = _totalMass / aSpG.getVoxelVolume();
if (Double.isNaN(value) | Double.isInfinite(value)) value = 0;
aSpG.addValueAt(value, _location);
}
/**
* \brief Add the reacting concentration of an agent to the received grid
*
* <p>Add the reacting concentration of an agent to the received grid
*
* @param aSpG Spatial grid used to sum catalysing mass
* @param catalystIndex Index of the compartment of the cell supporting the reaction
*/
public void fitMassOnGrid(SpatialGrid aSpG, int catalystIndex) {
if (isDead) return;
double value = particleMass[catalystIndex] / aSpG.getVoxelVolume();
if (Double.isNaN(value) | Double.isInfinite(value)) value = 0;
aSpG.addValueAt(value, _location);
}
/**
* \brief Add the reaction/growth rate of an agent on received grid, for a specified reaction
*
* <p>Add the total reaction/growth rate of an agent on received grid, for a specified reaction
*
* @param aRateGrid Spatial grid used to store total reaction rate
* @param reactionIndex Index of this declared reaction in the simulation dictionary
*/
public void fitReacRateOnGrid(SpatialGrid aRateGrid, int reactionIndex) {
if (isDead) return;
// growthRate is in [fgX.hr-1] so convert to concentration:
// [fgX.um-3.hr-1 = gX.L-1.hr-1]
double value = growthRate[reactionIndex] / aRateGrid.getVoxelVolume();
if (Double.isNaN(value) | Double.isInfinite(value)) value = 0;
aRateGrid.addValueAt(value, _location);
}
/**
* \brief Add the total volume rate of an agent on received grid
*
* <p>Add the total volume rate of an agent on received grid
*
* @param aSpG Spatial grid used to sum volume
*/
public void fitVolRateOnGrid(SpatialGrid aSpG) {
double value;
value = _netVolumeRate / aSpG.getVoxelVolume();
if (Double.isNaN(value) | Double.isInfinite(value)) value = 0;
aSpG.addValueAt(value, _location);
}
