// ## operation writeChemkinSpecies(ReactionModel,SystemSnapshot)
public static String writeChemkinSpecies(
ReactionModel p_reactionModel, SystemSnapshot p_beginStatus) {
// #[ operation writeChemkinSpecies(ReactionModel,SystemSnapshot)
StringBuilder result = new StringBuilder();
result.append("SPECIES\n");
CoreEdgeReactionModel cerm = (CoreEdgeReactionModel) p_reactionModel;
// write inert gas
for (Iterator iter = p_beginStatus.getInertGas(); iter.hasNext(); ) {
String name = (String) iter.next();
result.append('\t' + name + '\n');
}
// write species
for (Iterator iter = cerm.getSpecies(); iter.hasNext(); ) {
Species spe = (Species) iter.next();
result.append('\t' + spe.getChemkinName() + '\n');
}
result.append("END\n");
return result.toString();
// #]
}
/*
* public HashMap getLeafElements() { HashMap map = new HashMap(); Object[]
* elts = dataElements.values().toArray(); for (int j=0; j<elts.length; j++)
* { PDMDataElement data = (PDMDataElement) elts[j];
* map.put(data.getID(),data); } Object[] ops =
* operations.values().toArray(); for (int i=0; i<ops.length; i++){
* PDMOperation op = (PDMOperation) ops[i]; if
* (!(op.getInputElements().isEmpty())){ HashMap outs =
* op.getOutputElements(); Object[] outArray = outs.values().toArray(); for
* (int j=0; j<outArray.length; j++) { PDMDataElement d = (PDMDataElement)
* outArray[j]; map.remove(d.getID()); } } } return map; }
*/
public HashMap getLeafElements() {
HashMap result = new HashMap();
HashSet leafOps = getLeafOperations();
if (!(leafOps.isEmpty())) {
Iterator it = leafOps.iterator();
while (it.hasNext()) {
PDMOperation op = (PDMOperation) it.next();
PDMDataElement data = op.getOutputElement();
result.put(data.getID(), data);
}
} else {
Object[] elts = dataElements.values().toArray();
for (int j = 0; j < elts.length; j++) {
PDMDataElement data = (PDMDataElement) elts[j];
result.put(data.getID(), data);
}
Object[] ops = operations.values().toArray();
for (int i = 0; i < ops.length; i++) {
PDMOperation op = (PDMOperation) ops[i];
HashMap outs = op.getOutputElements();
Object[] outArray = outs.values().toArray();
for (int j = 0; j < outArray.length; j++) {
PDMDataElement d = (PDMDataElement) outArray[j];
result.remove(d.getID());
}
}
}
return result;
}
public void flipLayoutLeftRight() {
LayoutBox box = getExactLayoutBox();
Iterator<NodeLayout> ne = nodes.iterator();
while (ne.hasNext()) {
NodeLayout nl = ne.next();
if (nl.processID.equals("null")) {
nl.x =
box.topleft.x
+ (box.width - (nl.x - box.topleft.x))
- 60; // minus 60 which is the width of process node's box, since using upperleft
// coor
} else if (isSecondary(nl)) {
nl.x = box.topleft.x + (box.width - (nl.x - box.topleft.x)) - 60;
} else {
nl.x = box.topleft.x + (box.width - (nl.x - box.topleft.x)) - 20;
}
}
Iterator<EdgeLayout> e2 = edges.iterator();
EdgeLayout el;
while (e2.hasNext()) {
el = e2.next();
for (LayoutPoint lp : el.bends) {
lp.x = box.topleft.x + (box.width - (lp.x - box.topleft.x));
}
}
}
public void selectNext() {
Iterator i = new SelectionIterator(this);
if (m_actives.size() == 1) {
boolean isFound = false;
// loop the iterator in reverse order of drawing
while (i.hasNext()) {
GlyphObject object = (GlyphObject) i.next();
if (m_actives.isSelected(object)) {
isFound = true;
continue;
} // if
if (!isFound) {
continue;
} // if
m_actives.unselectAll();
m_actives.addActive(object);
return;
} // while i
} // if
i = new SelectionIterator(this);
if (i.hasNext()) {
GlyphObject object = (GlyphObject) i.next();
m_actives.unselectAll();
m_actives.addActive(object);
return;
} // if
}
public static String writeChemkinPdepReactions(ReactionSystem rs) {
// #[ operation writeChemkinReactions(ReactionModel)
StringBuilder result = new StringBuilder();
result.append("REACTIONS KCAL/MOLE\n");
LinkedList rList = new LinkedList();
LinkedList troeList = new LinkedList();
LinkedList tbrList = new LinkedList();
LinkedList duplicates = new LinkedList();
LinkedList lindeList = new LinkedList();
if (rs.dynamicSimulator instanceof JDASPK) {
rList = ((JDASPK) rs.dynamicSimulator).rList;
troeList = ((JDASPK) rs.dynamicSimulator).troeList;
tbrList = ((JDASPK) rs.dynamicSimulator).thirdBodyList;
duplicates = ((JDASPK) rs.dynamicSimulator).duplicates;
lindeList = ((JDASPK) rs.dynamicSimulator).lindemannList;
} else if (rs.dynamicSimulator instanceof JDASSL) {
rList = ((JDASSL) rs.dynamicSimulator).rList;
troeList = ((JDASSL) rs.dynamicSimulator).troeList;
tbrList = ((JDASSL) rs.dynamicSimulator).thirdBodyList;
duplicates = ((JDASSL) rs.dynamicSimulator).duplicates;
lindeList = ((JDASSL) rs.dynamicSimulator).lindemannList;
}
for (Iterator iter = rList.iterator(); iter.hasNext(); ) {
Reaction r = (Reaction) iter.next();
// 10/26/07 gmagoon: changed to avoid use of Global.temperature; I am using
// getPresentTemperature for the time being; it is possible that
// getInitialStatus.getTemperature or something similar may be more appropriate
result.append(r.toChemkinString(rs.getPresentTemperature()) + "\n");
// result.append(r.toChemkinString(Global.temperature)+"\n");
}
for (Iterator iter = troeList.iterator(); iter.hasNext(); ) {
Reaction r = (Reaction) iter.next();
result.append(r.toChemkinString(rs.getPresentTemperature()) + "\n");
// result.append(r.toChemkinString(Global.temperature)+"\n");
}
for (Iterator iter = tbrList.iterator(); iter.hasNext(); ) {
Reaction r = (Reaction) iter.next();
result.append(r.toChemkinString(rs.getPresentTemperature()) + "\n");
// result.append(r.toChemkinString(Global.temperature)+"\n");
}
for (Iterator iter = duplicates.iterator(); iter.hasNext(); ) {
Reaction r = (Reaction) iter.next();
result.append(r.toChemkinString(rs.getPresentTemperature()) + "\n\tDUP\n");
// result.append(r.toChemkinString(Global.temperature)+"\n\tDUP\n");
}
for (Iterator iter = lindeList.iterator(); iter.hasNext(); ) {
Reaction r = (Reaction) iter.next();
result.append(r.toChemkinString(rs.getPresentTemperature()) + "\n");
}
result.append("END\n");
return result.toString();
// #]
}
/**
* Writes the model to DOT.
*
* @param bw The writer
* @throws IOException If writing fails
*/
public void writeToDot(Writer bw) throws IOException {
// super.writeToDot(bw);
// Preamble of dot file
bw.write(
"digraph G {ranksep=\".3\"; fontsize=\"8\"; remincross=true; margin=\"0.0,0.0\"; rankdir=TB; ");
bw.write("fontname=\"Arial\"; \n");
bw.write("edge [arrowsize=\"0.5\"];\n");
bw.write("node [fontname=\"Arial\",fontsize=\"8\"];\n");
// Add the Data Element nodes
Iterator it = getVerticeList().iterator();
while (it.hasNext()) {
Object object = it.next();
if (object instanceof PDMDataElement) {
((PDMDataElement) object).writeToDot(bw, this);
}
}
// Add all edges
it = operations.values().iterator();
while (it.hasNext()) {
Object object = it.next();
if (object instanceof PDMOperation) {
((PDMOperation) object).writeToDot(bw, this);
}
}
bw.write("\n}\n");
}
// convert coordinates to relative coordinates with the top-left one as (0,0)
public void convertToRelativePositions() {
LayoutBox box = getExactLayoutBox();
// System.out.println("Box
// ("+box.topleft.x+","+box.topleft.y+");("+(box.topleft.x+box.width)+","+(box.topleft.y+box.height));
Iterator<NodeLayout> e = nodes.iterator();
NodeLayout nl;
while (e.hasNext()) {
nl = e.next();
/* Debug code
if(nl.x<box.topleft.x || nl.y<box.topleft.y || nl.x>(box.topleft.x+box.width) || nl.y>(box.topleft.y+box.height)){
System.out.println("Invalid node "+nl.x+","+nl.y);
}
//*/
nl.x = nl.x - box.topleft.x;
nl.y = nl.y - box.topleft.y;
}
Iterator<EdgeLayout> e2 = edges.iterator();
EdgeLayout el;
while (e2.hasNext()) {
el = e2.next();
for (LayoutPoint lp : el.bends) {
lp.x = lp.x - box.topleft.x;
lp.y = lp.y - box.topleft.y;
}
}
}
private QueryResult gatherResultInfoForSelectQuery(
String queryString, int queryNr, boolean sorted, Document doc, String[] rows) {
Element root = doc.getRootElement();
// Get head information
Element child =
root.getChild("head", Namespace.getNamespace("http://www.w3.org/2005/sparql-results#"));
// Get result rows (<head>)
List headChildren =
child.getChildren(
"variable", Namespace.getNamespace("http://www.w3.org/2005/sparql-results#"));
Iterator it = headChildren.iterator();
ArrayList<String> headList = new ArrayList<String>();
while (it.hasNext()) {
headList.add(((Element) it.next()).getAttributeValue("name"));
}
List resultChildren =
root.getChild("results", Namespace.getNamespace("http://www.w3.org/2005/sparql-results#"))
.getChildren(
"result", Namespace.getNamespace("http://www.w3.org/2005/sparql-results#"));
int nrResults = resultChildren.size();
QueryResult queryResult = new QueryResult(queryNr, queryString, nrResults, sorted, headList);
it = resultChildren.iterator();
while (it.hasNext()) {
Element resultElement = (Element) it.next();
String result = "";
// get the row values and paste it together to one String
for (int i = 0; i < rows.length; i++) {
List bindings =
resultElement.getChildren(
"binding", Namespace.getNamespace("http://www.w3.org/2005/sparql-results#"));
String rowName = rows[i];
for (int j = 0; j < bindings.size(); j++) {
Element binding = (Element) bindings.get(j);
if (binding.getAttributeValue("name").equals(rowName))
if (result.equals(""))
result +=
rowName + ": " + ((Element) binding.getChildren().get(0)).getTextNormalize();
else
result +=
"\n"
+ rowName
+ ": "
+ ((Element) binding.getChildren().get(0)).getTextNormalize();
}
}
queryResult.addResult(result);
}
return queryResult;
}
/**
* @return exact rectangle box bounding all the center points of the nodes and all the bend
* points.
*/
public LayoutBox getExactLayoutBox() {
Iterator<NodeLayout> e = nodes.iterator();
double tlx = 0, tly = 0, brx = 0, bry = 0; // top left, bottom right
NodeLayout nl;
if (e.hasNext()) {
nl = e.next();
tlx = nl.x;
tly = nl.y;
brx = nl.x;
bry = nl.y;
}
while (e.hasNext()) {
nl = e.next();
if (nl.x < tlx) {
tlx = nl.x;
}
if (nl.x > brx) {
brx = nl.x;
}
if (nl.y < tly) {
tly = nl.y;
}
if (nl.y > bry) {
bry = nl.y;
}
}
Iterator<EdgeLayout> ee = edges.iterator();
Iterator<LayoutPoint> be;
LayoutPoint lp;
EdgeLayout el;
while (ee.hasNext()) {
el = ee.next();
be = el.bends.iterator();
while (be.hasNext()) {
lp = be.next();
if (lp.x < tlx) {
tlx = lp.x;
}
if (lp.x > brx) {
brx = lp.x;
}
if (lp.y < tly) {
tly = lp.y;
}
if (lp.y > bry) {
bry = lp.y;
}
}
}
return new LayoutBox(tlx, tly, brx - tlx, bry - tly);
}
public String toString() {
if (isEmpty()) {
return "";
}
StringBuffer sb = new StringBuffer();
Iterator<NodeLayout> e = nodes.iterator();
while (e.hasNext()) sb.append((e.next()).toString());
sb.append("\n");
Iterator<EdgeLayout> ee = edges.iterator();
while (ee.hasNext()) sb.append((ee.next()).toString());
return sb.toString();
}
public static String writeGridOfRateCoeffs(ReactionModel p_reactionModel) {
StringBuilder result = new StringBuilder();
LinkedList pDepList = new LinkedList();
CoreEdgeReactionModel cerm = (CoreEdgeReactionModel) p_reactionModel;
for (Iterator iter = PDepNetwork.getNetworks().iterator(); iter.hasNext(); ) {
PDepNetwork pdn = (PDepNetwork) iter.next();
for (ListIterator pdniter = pdn.getNetReactions().listIterator(); pdniter.hasNext(); ) {
PDepReaction rxn = (PDepReaction) pdniter.next();
if (cerm.categorizeReaction(rxn) != 1) continue;
// check if this reaction is not already in the list and also check if this reaction has a
// reverse reaction
// which is already present in the list.
if (rxn.getReverseReaction() == null) rxn.generateReverseReaction();
if (!rxn.reactantEqualsProduct()
&& !pDepList.contains(rxn)
&& !pDepList.contains(rxn.getReverseReaction())) {
pDepList.add(rxn);
}
}
}
Temperature[] tempsUsedInFame = PDepRateConstant.getTemperatures();
int numTemps = tempsUsedInFame.length;
Pressure[] pressUsedInFame = PDepRateConstant.getPressures();
int numPress = pressUsedInFame.length;
for (int i = 0; i < numTemps; i++) {
for (int j = 0; j < numPress; j++) {
result.append(
"T=" + tempsUsedInFame[i].getK() + "K,P=" + pressUsedInFame[j].getBar() + "bar\t");
}
result.append("\n");
}
result.append("\n");
for (Iterator iter = pDepList.iterator(); iter.hasNext(); ) {
PDepReaction r = (PDepReaction) iter.next();
result.append(r.toString() + "\n");
double[][] rates = new double[numTemps][numPress];
rates = r.getPDepRate().getRateConstants();
for (int i = 0; i < numTemps; i++) {
for (int j = 0; j < numPress; j++) {
result.append(rates[i][j] + "\t");
}
result.append("\n");
}
result.append("\n");
}
return result.toString();
}
// ## operation writeChemkinReactions(ReactionModel)
// 10/26/07 gmagoon: changed to take temperature as parameter (it doesn't seem like this method is
// currently used anywhere)
public static String writeChemkinReactions(
ReactionModel p_reactionModel, Temperature p_temperature) {
// #[ operation writeChemkinReactions(ReactionModel)
StringBuilder result = new StringBuilder();
result.append("REACTIONS KCAL/MOLE\n");
CoreEdgeReactionModel cerm = (CoreEdgeReactionModel) p_reactionModel;
LinkedHashSet all = cerm.getReactedReactionSet();
HashSet hs = new HashSet();
int numfor = 0;
int numrev = 0;
int numdup = 0;
int numnorev = 0;
for (Iterator iter = all.iterator(); iter.hasNext(); ) {
Reaction rxn = (Reaction) iter.next();
if (rxn.isForward()) {
result.append(
" "
+ rxn.toChemkinString(p_temperature)
+ "\n"); // 10/26/07 gmagoon: changed to avoid use of Global.temperature
// result.append(" " + rxn.toChemkinString(Global.temperature) + "\n");
}
}
result.append("END\n");
return result.toString();
// #]
}
/** A repository root has been added. Notify any listeners. */
public void rootAdded(ICVSRepositoryLocation root) {
Iterator it = listeners.iterator();
while (it.hasNext()) {
IRepositoryListener listener = (IRepositoryListener) it.next();
listener.repositoryAdded(root);
}
}
public PDMState checkIfStateExists(
PDMStateSpace statespace, HashSet data, HashSet exec, HashSet failed) {
PDMState result = null;
boolean bool = false;
HashSet states = statespace.getStates();
Iterator it = states.iterator();
while (it.hasNext() && !bool) {
PDMState state2 = (PDMState) it.next();
boolean one = false;
boolean two = false;
boolean three = false;
HashSet data2 = state2.dataElements;
HashSet exec2 = state2.executedOperations;
HashSet failed2 = state2.failedOperations;
one = hashSetContainsSameDataElements(data, data2);
two = hashSetContainsSameOperations(exec, exec2);
three = hashSetContainsSameOperations(failed, failed2);
if (one && two && three) {
bool = true;
result = state2;
}
}
return result;
}
/**
* Method filterResources filters the given resources using the given working set.
*
* @param current
* @param resources
* @return ICVSRemoteResource[]
*/
public ICVSRemoteResource[] filterResources(
IWorkingSet workingSet, ICVSRemoteResource[] resources) {
if (workingSet == null) return resources;
// get the projects associated with the working set
IAdaptable[] adaptables = workingSet.getElements();
Set projects = new HashSet();
for (int i = 0; i < adaptables.length; i++) {
IAdaptable adaptable = adaptables[i];
Object adapted = adaptable.getAdapter(IResource.class);
if (adapted != null) {
// Can this code be generalized?
IProject project = ((IResource) adapted).getProject();
projects.add(project);
}
}
List result = new ArrayList();
for (int i = 0; i < resources.length; i++) {
ICVSRemoteResource resource = resources[i];
for (Iterator iter = projects.iterator(); iter.hasNext(); ) {
IProject project = (IProject) iter.next();
if (project.getName().equals(resource.getName())) {
result.add(resource);
break;
}
}
}
return (ICVSRemoteResource[]) result.toArray(new ICVSRemoteResource[result.size()]);
}
/**
* Reload the composite nodes of the circuit, this is recursive
*
* @param g the graphics that will paint the node
* @throws CircuitLoadingException if the internal circuit can not be loaded
*/
public void reloadCompositeNodes(Graphics g) throws CircuitLoadingException {
for (iterNodes = this.nodes.iterator(); iterNodes.hasNext(); ) {
Node n = iterNodes.next();
if (n.getCategoryID() == Node.COMPOSITE) ((CompositeNode) n).reload(g);
}
}
private String unirMapeos(LinkedHashMap<String, String> mapa, Object[] descripciones) {
// mapa(llave,punto)
// descripciones en el mismo orden que el mapeo
String comillas = "\"";
StringBuilder builder = new StringBuilder();
Iterator<String> iterador = mapa.keySet().iterator();
int indice = 0;
while (iterador.hasNext()) {
String llave = iterador.next();
String puntaje = mapa.get(llave);
String descripcion =
descripciones[indice].toString().equals("null") ? "" : descripciones[indice].toString();
builder.append(comillas + descripcion + comillas + "," + comillas + puntaje + comillas + ",");
indice++;
}
return builder.toString();
}
public void display(Graphics2D g, AffineTransform a_trans) {
Iterator i = createIterator();
while (i.hasNext()) {
GlyphObject object = (GlyphObject) i.next();
object.display(g, a_trans);
} // while
}
private void broadcastRepositoriesChanged(ICVSRepositoryLocation[] roots) {
if (roots.length == 0) return;
Iterator it = listeners.iterator();
while (it.hasNext()) {
IRepositoryListener listener = (IRepositoryListener) it.next();
listener.repositoriesChanged(roots);
}
}
public String toBeautifiedString() {
StringBuffer sb = new StringBuffer();
Iterator<NodeLayout> e = nodes.iterator();
while (e.hasNext()) sb.append((e.next()).toBeautifiedString());
sb.append("\n");
Iterator<EdgeLayout> ee = edges.iterator();
while (ee.hasNext()) {
sb.append((ee.next()).toBeautifiedString());
}
sb.append("\n\nNumber of Nodes: ");
sb.append(nodes.size());
sb.append("\nNumber of Edges: ");
sb.append(edges.size() + "\n");
return sb.toString();
}
private void addDefaultValues(Map attributes, Map mappings) {
if (mappings == null) return;
Iterator i = mappings.entrySet().iterator();
while (i.hasNext()) {
Map.Entry e = (Map.Entry) i.next();
TagMap.AttributeMapping m = (TagMap.AttributeMapping) e.getValue();
if (null != m && null != m.getDefaultValue() && null == attributes.get(m.getPropertyName()))
attributes.put(m.getPropertyName(), m.getDefaultValue());
}
}
// convert coordinates to shifted coordinates with the top-left one as (xs,ys)
public void convertToShiftedPositions(double xs, double ys) {
convertToRelativePositions();
Iterator<NodeLayout> e = nodes.iterator();
NodeLayout nl;
while (e.hasNext()) {
nl = e.next();
nl.x += xs;
nl.y += ys;
}
Iterator<EdgeLayout> e2 = edges.iterator();
EdgeLayout el;
while (e2.hasNext()) {
el = e2.next();
for (LayoutPoint lp : el.bends) {
lp.x += xs;
lp.y += ys;
}
}
}
/**
* Get the outputable nodes of the circuit
*
* @return an hashset of the outputable nodes of the circuit
*/
public HashSet<Outputable> getOutputables() {
HashSet<Outputable> outputs = new HashSet<Outputable>();
for (iterNodes = getNodesIterator(); iterNodes.hasNext(); ) {
Node n = iterNodes.next();
if (n.getCategoryID() == Node.OUTPUT) outputs.add((Outputable) n);
}
return outputs;
}
/**
* Get the inputable nodes of the circuit
*
* @return an hashset of the inputable nodes of the circuit
*/
public HashSet<Inputable> getInputables() {
HashSet<Inputable> inputs = new HashSet<Inputable>();
for (iterNodes = getNodesIterator(); iterNodes.hasNext(); ) {
Node n = iterNodes.next();
if (n.getCategoryID() == Node.INPUT) inputs.add((Inputable) n);
}
return inputs;
}
protected void doGet(HttpServletRequest req, HttpServletResponse res)
throws ServletException, IOException {
try {
DateFormat df = DateFormat.getDateTimeInstance();
String titleStr = "C3P0 Status - " + df.format(new Date());
DocumentBuilderFactory fact = DocumentBuilderFactory.newInstance();
DocumentBuilder db = fact.newDocumentBuilder();
Document doc = db.newDocument();
Element htmlElem = doc.createElement("html");
Element headElem = doc.createElement("head");
Element titleElem = doc.createElement("title");
titleElem.appendChild(doc.createTextNode(titleStr));
Element bodyElem = doc.createElement("body");
Element h1Elem = doc.createElement("h1");
h1Elem.appendChild(doc.createTextNode(titleStr));
Element h3Elem = doc.createElement("h3");
h3Elem.appendChild(doc.createTextNode("PooledDataSources"));
Element pdsDlElem = doc.createElement("dl");
pdsDlElem.setAttribute("class", "PooledDataSources");
for (Iterator ii = C3P0Registry.getPooledDataSources().iterator(); ii.hasNext(); ) {
PooledDataSource pds = (PooledDataSource) ii.next();
StatusReporter sr = findStatusReporter(pds, doc);
pdsDlElem.appendChild(sr.reportDtElem());
pdsDlElem.appendChild(sr.reportDdElem());
}
headElem.appendChild(titleElem);
htmlElem.appendChild(headElem);
bodyElem.appendChild(h1Elem);
bodyElem.appendChild(h3Elem);
bodyElem.appendChild(pdsDlElem);
htmlElem.appendChild(bodyElem);
res.setContentType("application/xhtml+xml");
TransformerFactory tf = TransformerFactory.newInstance();
Transformer transformer = tf.newTransformer();
Source src = new DOMSource(doc);
Result result = new StreamResult(res.getOutputStream());
transformer.transform(src, result);
} catch (IOException e) {
throw e;
} catch (Exception e) {
throw new ServletException(e);
}
}
public EdgeLayout getEdgeLayouts(String spid, String sid, String tpid, String tid) {
Iterator<EdgeLayout> ee = edges.iterator();
EdgeLayout el;
while (ee.hasNext()) {
el = ee.next();
if (el.sourceNode.equals(sid) && el.targetNode.equals(tid)) {
return el;
}
}
return null;
} // */
public void filpLayoutUpDown() {
LayoutBox box = getExactLayoutBox();
Iterator<NodeLayout> ne = nodes.iterator();
while (ne.hasNext()) {
NodeLayout nl = ne.next();
if (nl.cofactor.equalsIgnoreCase("true")) {
nl.y = box.topleft.y + (box.height - (nl.y - box.topleft.y)) - 12;
} else {
nl.y = box.topleft.y + (box.height - (nl.y - box.topleft.y)) - 20;
}
}
Iterator<EdgeLayout> e2 = edges.iterator();
EdgeLayout el;
while (e2.hasNext()) {
el = e2.next();
for (LayoutPoint lp : el.bends) {
lp.y = box.topleft.y + (box.height - (lp.y - box.topleft.y));
}
}
}
public void flipLayoutUpDown() {
LayoutBox box = getExactLayoutBox();
Iterator<NodeLayout> ne = nodes.iterator();
while (ne.hasNext()) {
NodeLayout nl = ne.next();
if (isSecondary(nl)) {
nl.y = box.topleft.y + (box.height - (nl.y - box.topleft.y)) - 12;
} else {
nl.y = box.topleft.y + (box.height - (nl.y - box.topleft.y)) - 20;
}
}
Iterator<EdgeLayout> e2 = edges.iterator();
EdgeLayout el;
while (e2.hasNext()) {
el = e2.next();
for (LayoutPoint lp : el.bends) {
lp.y = box.topleft.y + (box.height - (lp.y - box.topleft.y));
}
}
}
private void writeState(XMLWriter writer) {
writer.startTag(RepositoriesViewContentHandler.REPOSITORIES_VIEW_TAG, null, true);
// Write the repositories
Collection repos = Arrays.asList(getKnownRepositoryLocations());
Iterator it = repos.iterator();
while (it.hasNext()) {
CVSRepositoryLocation location = (CVSRepositoryLocation) it.next();
RepositoryRoot root = getRepositoryRootFor(location);
root.writeState(writer);
}
writer.endTag(RepositoriesViewContentHandler.REPOSITORIES_VIEW_TAG);
}
public String toString() {
StringBuffer sb = new StringBuffer();
sb.append(sourcepid + "," + sourceNode + "," + targetpid + "," + targetNode + ",");
Iterator<LayoutPoint> e = bends.iterator();
LayoutPoint b;
while (e.hasNext()) {
b = (LayoutPoint) e.next();
sb.append(b.x + "," + b.y + ",");
}
sb.append("\n");
return sb.toString();
}