/*the sequence evidences must be sorted on :
1. best_confidence
2. #psms
3. #assays
4. sequence length
*/
@Override
public int compareTo(Object o) {
if (o instanceof PeptideEvidence) {
PeptideEvidence other = (PeptideEvidence) o;
if (other.getBestPEP() > this.getBestPEP()) {
return -1;
} else if (other.getBestPEP() < this.getBestPEP()) {
return 1;
} else {
if (other.getTotalPSMCount() > this.getTotalPSMCount()) {
return -1;
} else if (other.getTotalPSMCount() < this.getTotalPSMCount()) {
return 1;
} else {
if (other.getAssayCount().size() > this.getAssayCount().size()) {
return -1;
} else if (other.getAssayCount().size() < this.getAssayCount().size()) {
return 1;
} else {
if (other.getSequence().length() < this.getSequence().length()) {
return -1;
} else if (other.getSequence().length() > this.getSequence().length()) {
return 1;
} else {
return 0;
}
}
}
}
} else {
return -1;
}
}
