public void linkTrees() { // keep previous PartitionTreePrior for reuse
int[] selRows = dataTable.getSelectedRows();
List<PartitionData> selectedPartitionData = new ArrayList<PartitionData>();
for (int row : selRows) {
PartitionData partition = options.dataPartitions.get(row);
if (!selectedPartitionData.contains(partition)) selectedPartitionData.add(partition);
}
if (options.allowDifferentTaxa) { // BEAST cannot handle multi <taxa> ref for 1 tree
if (selectedPartitionData.size() > 1) {
if (!options.validateDiffTaxa(selectedPartitionData)) {
JOptionPane.showMessageDialog(
this,
"To accommodate different taxa for each partition trees cannot be linked.",
"Illegal Configuration",
JOptionPane.ERROR_MESSAGE);
return;
}
}
}
Object[] treeArray = options.getPartitionTreeModels(selectedPartitionData).toArray();
if (selectTreeDialog == null) {
selectTreeDialog = new SelectTreeDialog(frame);
}
int result = selectTreeDialog.showDialog(treeArray);
if (result != JOptionPane.CANCEL_OPTION) {
PartitionTreeModel model = selectTreeDialog.getTree();
if (selectTreeDialog.getMakeCopy()) {
model.setName(selectTreeDialog.getName());
}
PartitionTreePrior prior = model.getPartitionTreePrior();
options.linkTreePriors(prior);
for (PartitionData partition : selectedPartitionData) {
partition.setPartitionTreeModel(model);
}
}
modelsChanged();
fireDataChanged();
options.taxonSets.clear();
options.taxonSetsMono.clear();
repaint();
}
