public FastaIndexedSequence(String path) throws IOException {
this.path = path;
contentLength = ParsingUtils.getContentLength(path);
String indexPath = path + ".fai";
// The check below is not useful in the files have been copied or moved, which is always the
// case for our hosted
// genomes. It causes lots of spurious warnings
// if(ParsingUtils.getLastModified(path) > ParsingUtils.getLastModified(indexPath)){
// log.warn("Index file for " + path + " is older than the file it indexes");
// }
index = new FastaIndex(indexPath);
chromoNamesList = new ArrayList<String>(index.getSequenceNames());
}
