/** {@inheritDoc} */
@Override
public final Object read(final InputStream is) {
final BAM result = new BAM();
final EncogReadHelper in = new EncogReadHelper(is);
EncogFileSection section;
while ((section = in.readNextSection()) != null) {
if (section.getSectionName().equals("BAM") && section.getSubSectionName().equals("PARAMS")) {
final Map<String, String> params = section.parseParams();
result.getProperties().putAll(params);
}
if (section.getSectionName().equals("BAM") && section.getSubSectionName().equals("NETWORK")) {
final Map<String, String> params = section.parseParams();
result.setF1Count(EncogFileSection.parseInt(params, PersistConst.PROPERTY_F1_COUNT));
result.setF2Count(EncogFileSection.parseInt(params, PersistConst.PROPERTY_F2_COUNT));
result.setWeightsF1toF2(
EncogFileSection.parseMatrix(params, PersistConst.PROPERTY_WEIGHTS_F1_F2));
result.setWeightsF2toF1(
EncogFileSection.parseMatrix(params, PersistConst.PROPERTY_WEIGHTS_F2_F1));
}
}
return result;
}
/** {@inheritDoc} */
@Override
public final void save(final OutputStream os, final Object obj) {
final EncogWriteHelper out = new EncogWriteHelper(os);
final BAM bam = (BAM) obj;
out.addSection("BAM");
out.addSubSection("PARAMS");
out.addProperties(bam.getProperties());
out.addSubSection("NETWORK");
out.writeProperty(PersistConst.PROPERTY_F1_COUNT, bam.getF1Count());
out.writeProperty(PersistConst.PROPERTY_F2_COUNT, bam.getF2Count());
out.writeProperty(PersistConst.PROPERTY_WEIGHTS_F1_F2, bam.getWeightsF1toF2());
out.writeProperty(PersistConst.PROPERTY_WEIGHTS_F2_F1, bam.getWeightsF2toF1());
out.flush();
}