private void apply(EntityBasedDiff diff) {
IRI iriOfNewlyCreatedClass = null;
String code = null;
MatchedAxiom splitAxiomWithBadDescription = null;
MatchedAxiom splitFrom = null;
for (MatchedAxiom match : diff.getAxiomMatches()) {
if (match.getDescription().equals(MatchedAxiom.AXIOM_ADDED)
&& isSplitFromAnnotationAssertion(match.getTargetAxiom())) {
splitAxiomWithBadDescription = match;
splitFrom = new MatchedAxiom(null, match.getTargetAxiom(), SPLIT);
iriOfNewlyCreatedClass =
(IRI) ((OWLAnnotationAssertionAxiom) match.getTargetAxiom()).getSubject();
code =
((OWLLiteral) ((OWLAnnotationAssertionAxiom) match.getTargetAxiom()).getValue())
.getLiteral();
break;
}
}
if (splitFrom != null) {
changes.removeMatch(splitAxiomWithBadDescription);
changes.addMatch(splitFrom);
handleNewSplitAxioms(iriOfNewlyCreatedClass, code, diff);
}
}
private OWLClass getClassThatWasSplit(String code) {
if (code == null) {
return null;
}
Collection<OWLEntity> possiblySplitEntities = mapper.getTargetEntities(code);
OWLClass classThatWasSplit = null;
for (OWLEntity possiblySplityEntity : possiblySplitEntities) {
if (possiblySplityEntity instanceof OWLClass) {
if (classThatWasSplit != null) {
return null;
} else {
classThatWasSplit = (OWLClass) possiblySplityEntity;
EntityBasedDiff classThatWasSplitDiff = changes.getTargetDiffMap().get(classThatWasSplit);
if (classThatWasSplitDiff != null) {
classThatWasSplit =
(OWLClass)
classThatWasSplitDiff
.getSourceEntity(); // if it was created we do really want null
}
}
}
}
return classThatWasSplit;
}
private void handleNewSplitAxioms(
OWLClass newlyCreatedClass, OWLClass classThatWasSplit, EntityBasedDiff diff) {
OWLOntology sourceOntology = diffMap.getSourceOntology();
Map<OWLEntity, IRI> newTargetToSplitSource =
Collections.singletonMap((OWLEntity) newlyCreatedClass, classThatWasSplit.getIRI());
OWLObjectDuplicator duplicator =
new OWLObjectDuplicator(newTargetToSplitSource, diffMap.getOWLDataFactory());
Set<OWLClassExpression> inferredParents = getInferredParents(sourceOntology, classThatWasSplit);
for (MatchedAxiom match : new ArrayList<MatchedAxiom>(diff.getAxiomMatches())) {
if (match.getDescription().equals(MatchedAxiom.AXIOM_ADDED)
&& cameFromSourceOntology(
(OWLAxiom) duplicator.duplicateObject(match.getTargetAxiom()),
sourceOntology,
classThatWasSplit,
inferredParents)) {
MatchedAxiom modifiedBySplit =
new MatchedAxiom(null, match.getTargetAxiom(), COPIED_FROM_SPLIT);
changes.removeMatch(match);
changes.addMatch(modifiedBySplit);
}
}
}
