Example #1
0
  static ArrayList<String> checkForNewTransitionsAndPlaces(
      String sRead, ArrayList<Transition> transitions, ArrayList<Place> places, PetriNet pn) {
    ArrayList<String> stParts = new ArrayList<String>(Arrays.asList(sRead.split(" ")));
    int k;

    for (int i = 0; i < stParts.size(); i++) {
      String st = stParts.get(i);
      if (isPlace(st)) {
        if (findPlace(st, places) == null) {
          Place p = new Place(st, pn);
          pn.addPlace(p);
          places.add(p);
        }
      } else {
        st = repairTransitionString(st);
        k = st.indexOf(PetrifyConstants.EDGEDOCSSEPARATOR);
        if (k != -1) {
          if (findTransition(st, transitions) == null) {
            Transition t = new Transition(new LogEvent(st, ""), pn);
            pn.addTransition(t);
            t.setIdentifier(st);
            transitions.add(t);
          }
        }
      }
    }
    return stParts;
  }
  /**
   * Calculates the "Behavioral Recall" metric for a given mined model with respect to a log and a
   * reference model.
   *
   * @param model The resulting Petri net generated by a mining algorithm.
   * @param referenceLog The log to be used during the calculation of the behavioral recall value of
   *     the mined model.
   * @param referenceModel The Petri net used to measure behavioral recall of the mined model.
   * @param progress Progress
   * @return The behavioral recall value (<code>[0, 1]</code>) of the mined model. If the behavioral
   *     recall value cannot be calculated, the value <code>BenchmarkMetric.INVALID_MEASURE_VALUE
   *     </code> is returned.
   */
  public double measure(
      PetriNet model, LogReader referenceLog, PetriNet referenceModel, Progress progress) {

    // check precondition: no shared inputs for duplicate tasks
    if (model.hasDuplicatesWithSharedInputPlaces() == true
        || referenceModel.hasDuplicatesWithSharedInputPlaces() == true) {
      return BenchmarkMetric.INVALID_MEASURE_VALUE;
    }

    try {
      HeuristicsNet HNmodel =
          new PetriNetToHeuristicNetConverter()
              .toHeuristicsNet(
                  PetriNetToHeuristicNetConverter.removeUnnecessaryInvisibleTasksFromPetriNet(
                      (PetriNet) model.clone()));
      HeuristicsNet HNreferenceModel =
          new PetriNetToHeuristicNetConverter()
              .toHeuristicsNet(
                  PetriNetToHeuristicNetConverter.removeUnnecessaryInvisibleTasksFromPetriNet(
                      (PetriNet) referenceModel.clone()));
      TraceParsing behavioralMetrics = new TraceParsing(referenceLog, HNreferenceModel, HNmodel);
      return behavioralMetrics.getRecall();
    } catch (Exception e) {
      System.err.println(
          "BehavioralRecallMetric >>> Could not calculate the behavioral recall value!");
      e.printStackTrace();
    }
    return BenchmarkMetric.INVALID_MEASURE_VALUE;
  }
  public static PetriNet epcToPetriNet(ConfigurableEPC epc) throws SerendipException {
    PetriNet pn = null;
    if (null == epc) {
      throw new SerendipException("No model is available");
    }

    log.debug("Converting EPC: " + epc.getIdentifier());
    // Conversion
    // EPCToPetriNetConverterPlugin epcToPNplugin = new
    // EPCToPetriNetConverterPlugin();
    // pn = epcToPNplugin.convert(epc);

    pn = EPCToPetriNetConverter.convert(epc, new HashMap(), null, null);

    // DEBUG
    Iterator<EPCEvent> events = epc.getEvents().iterator();
    while (events.hasNext()) {
      log.debug(">" + events.next().getIdentifier());
    }

    Iterator<Place> places = pn.getPlaces().iterator();
    while (places.hasNext()) {
      log.debug("]" + places.next().getIdentifier());
    }
    // end DEBUG
    if (null == pn) {
      throw new SerendipException("Cannot get the equivalent petrinet of " + epc.getId());
    }
    pn.setName(epc.getIdentifier());

    return pn;
  }
Example #4
0
  public TreeSet<ProcessQueryResult> getPetriNet(Object o) {
    TreeSet<ProcessQueryResult> ret = new TreeSet<ProcessQueryResult>();
    if (o instanceof PetriNet) {
      PetriNet q = (PetriNet) o;
      DataManager dm = DataManager.getInstance();
      String strSelectPetriNet = "select process_id, pnml from petrinet";
      ResultSet rs =
          dm.executeSelectSQL(strSelectPetriNet, 0, Integer.MAX_VALUE, dm.getFetchSize());
      try {
        while (rs.next()) {
          PetriNet c = null;
          if (dm.getDBName().equalsIgnoreCase("postgresql")
              || dm.getDBName().equalsIgnoreCase("mysql")) {
            String str = rs.getString("pnml");
            byte[] temp = str.getBytes();
            c = PetriNetUtil.getPetriNetFromPnmlBytes(temp);
          } else if (dm.getDBName().equalsIgnoreCase("derby")) {
            InputStream in = rs.getAsciiStream("pnml");
            PnmlImport pnml = new PnmlImport();
            PetriNetResult result = (PetriNetResult) pnml.importFile(in);
            c = result.getPetriNet();
            result.destroy();
            in.close();
          } else {
            System.out.println(dm.getDBName() + " unsupported");
            System.exit(-1);
          }
          long process_id = rs.getLong("process_id");

          if (Ullman4PetriNet.subGraphIsomorphism(q, c)) {
            ret.add(new ProcessQueryResult(process_id, 1));
          }
          c.destroyPetriNet();
        }
        java.sql.Statement stmt = rs.getStatement();
        rs.close();
        stmt.close();
      } catch (SQLException e) {
        // TODO Auto-generated catch block
        e.printStackTrace();
      } catch (IOException e) {
        e.printStackTrace();
      }
    }

    return ret;
  }
Example #5
0
  static void addFinalPlace(
      ArrayList<Place> places, ArrayList<Transition> transitions, PetriNet pn) {
    Place p = null;
    boolean endTransitionsExist = false;

    for (int i = 0; i < transitions.size(); i++) {
      Transition t = transitions.get(i);
      String id = t.toString();
      if (id.length() > 2 && id.substring(0, 3).equals("END")) {
        if (!endTransitionsExist) {
          p = new Place("END", pn);
          pn.addPlace(p);
          places.add(p);
        }
        PNEdge finalEdge = new PNEdge(t, p);
        pn.addEdge(finalEdge);
        endTransitionsExist = true;
      }
    }
  }
Example #6
0
  public static PetriNet convert(ConfigurableEPC baseEPC) {
    HashMap<EPCFunction, Transition> functionActivityMapping;
    HashMap<EPCConnector, Place> xorconnectorChoiceMapping;

    // HV: Initialize the mappings.
    functionActivityMapping = new HashMap<EPCFunction, Transition>();
    xorconnectorChoiceMapping = new HashMap<EPCConnector, Place>();

    // Check to use the weights if necessary
    // HV: Add both mappings. On completion, these will be filledd.
    PetriNet petrinet =
        EPCToPetriNetConverter.convert(
            baseEPC, new HashMap(), functionActivityMapping, xorconnectorChoiceMapping);

    HashSet visible = new HashSet();

    // HV: The next block is taken care of by the functionActivityMapping
    // below.
    /*
     * Iterator it = petrinet.getTransitions().iterator(); while
     * (it.hasNext()) { Transition t = (Transition) it.next(); if (t.object
     * instanceof EPCFunction) { // if (t.getLogEvent() != null) { // Add
     * transitions with LogEvent (i.e. referring to functions)
     * visible.add(t); } }
     */

    // HV: Prevent the places mapped onto from being reduced.
    visible.addAll(functionActivityMapping.values());
    visible.addAll(xorconnectorChoiceMapping.values());
    Message.add(visible.toString(), Message.DEBUG);

    Iterator it = petrinet.getPlaces().iterator();
    while (it.hasNext()) {
      Place p = (Place) it.next();
      if (p.inDegree() * p.outDegree() == 0) {
        // Add Initial and final places to visible, i.e. places that
        // refer to in and output events
        visible.add(p);
      }
    }

    // Reduce the PetriNet with Murata rules, while keeping the visible ones
    PetriNetReduction pnred = new PetriNetReduction();
    pnred.setNonReducableNodes(visible);

    HashMap pnMap = new HashMap(); // Used to map pre-reduction nodes to
    // post-reduction nodes.
    PetriNet reduced = pnred.reduce(petrinet, pnMap);

    if (reduced != petrinet) {
      // Update both mappings from pre-reduction nodes to post-reduction
      // nodes.
      HashMap<EPCFunction, Transition> newFunctionActivityMapping =
          new HashMap<EPCFunction, Transition>();
      for (EPCFunction function : functionActivityMapping.keySet()) {
        Transition transition = (Transition) functionActivityMapping.get(function);
        if (pnMap.keySet().contains(transition)) {
          newFunctionActivityMapping.put(function, (Transition) pnMap.get(transition));
        }
      }
      functionActivityMapping = newFunctionActivityMapping;
      HashMap<EPCConnector, Place> newXorconnectorChoiceMapping =
          new HashMap<EPCConnector, Place>();
      for (EPCConnector connector : xorconnectorChoiceMapping.keySet()) {
        Place place = (Place) xorconnectorChoiceMapping.get(connector);
        if (pnMap.keySet().contains(place)) {
          newXorconnectorChoiceMapping.put(connector, (Place) pnMap.get(place));
        }
      }
      xorconnectorChoiceMapping = newXorconnectorChoiceMapping;
    }
    reduced.makeClusters();

    // filter the \nunknown:normal
    ArrayList<Transition> alTrans = reduced.getVisibleTasks();
    for (int i = 0; i < alTrans.size(); i++) {
      Transition t = alTrans.get(i);
      String id = t.getIdentifier();
      int idx = id.indexOf("\\nunknown:normal");
      if (idx > 0) {
        id = id.substring(0, idx);
      }
      // �˴������ֵ��ѯ�滻���е�label
      String mappedId = htDict.get(id);
      if (mappedId != null) {
        t.setIdentifier(mappedId);
      } else {
        t.setIdentifier(id);
      }
    }

    return reduced;
  }
Example #7
0
  public static PetriNet read(InputStream input) throws IOException {
    PetriNet pn = new PetriNet();
    ArrayList<Transition> transitions = new ArrayList<Transition>();
    ArrayList<Place> places = new ArrayList<Place>();

    BufferedReader in = new BufferedReader(new InputStreamReader(input));
    ArrayList<String> events;
    ArrayList<String> stParts;
    String sRead, s;

    do { // go through comments
      sRead = in.readLine();
    } while (sRead.charAt(0) == '#');
    sRead = in.readLine();
    // get the set of events and create PN transitions
    s = sRead.substring(sRead.indexOf("  ") + 2);
    events = new ArrayList<String>(Arrays.asList(s.split(" ")));
    for (String o : events) {
      // Transition t = new Transition(o, pn);
      o = repairTransitionString(o);
      Transition t = new Transition(new LogEvent(o, ""), pn);
      t.setIdentifier(o);
      pn.addTransition(t);
      transitions.add(t);
    }
    in.readLine();
    // reading the main lines
    sRead = in.readLine();
    sRead = sRead.replace("/", PetrifyConstants.EDGEDOCSSEPARATOR); // dot
    // doesn't
    // eat
    // '/'
    // symbols
    while (sRead.charAt(0) != '.') {
      // look for new transitions (with "__") and new places and add them
      // to the lists
      stParts = checkForNewTransitionsAndPlaces(sRead, transitions, places, pn);
      if (isPlace(stParts.get(0))) {
        Place placeFirst = findPlace(stParts.get(0), places);
        for (int i = 1; i < stParts.size(); i++) {
          String stRepaired = repairTransitionString(stParts.get(i));
          Transition aTransition = findTransition(stRepaired, transitions);
          PNEdge newEdge = new PNEdge(placeFirst, aTransition);
          pn.addEdge(newEdge);
        }
      } else {
        String stRepaired = repairTransitionString(stParts.get(0));
        Transition transitionFirst = findTransition(stRepaired, transitions);
        for (int i = 1; i < stParts.size(); i++) {
          Place aPlace = findPlace(stParts.get(i), places);
          PNEdge newEdge = new PNEdge(transitionFirst, aPlace);
          pn.addEdge(newEdge);
        }
      }
      sRead = in.readLine();
      sRead = sRead.replace("/", PetrifyConstants.EDGEDOCSSEPARATOR);
    }
    // makeEndsBlack(transitions); // end transitions must be black
    addFinalPlace(places, transitions, pn);
    return pn;
  }