/**
* sets the corresponding fields in data only if they are not null
*
* @param data PartData object to converted to Entry
* @param entry if null, a new entry is created otherwise entry is used
* @return converted PartData object
*/
public static Entry updateEntryField(PartData data, Entry entry) {
EntryType type = data.getType();
if (type == null) return entry;
switch (type) {
case PLASMID:
entry = setPlasmidFields(data.getPlasmidData(), entry);
break;
case STRAIN:
entry = setStrainFields(data.getStrainData(), entry);
break;
case PART:
break;
case ARABIDOPSIS:
entry = setSeedFields(data.getArabidopsisSeedData(), entry);
break;
}
entry = setCommon(entry, data);
return entry;
}
public static Entry infoToEntry(PartData info) {
EntryType type = info.getType();
Entry entry;
switch (type) {
case PLASMID:
entry = setPlasmidFields(info.getPlasmidData(), new Plasmid());
break;
case STRAIN:
entry = setStrainFields(info.getStrainData(), new Strain());
break;
case ARABIDOPSIS:
entry = setSeedFields(info.getArabidopsisSeedData(), new ArabidopsisSeed());
break;
case PART:
default:
entry = new Part();
break;
}
if (entry == null) return null;
// common fields
if (StringUtils.isEmpty(info.getRecordId())) entry.setRecordId(UUID.randomUUID().toString());
else entry.setRecordId(info.getRecordId());
entry.setVersionId(entry.getRecordId());
if (info.getCreationTime() == 0) entry.setCreationTime(new Date());
else entry.setCreationTime(new Date(info.getCreationTime()));
entry.setModificationTime(entry.getCreationTime());
entry = setCommon(entry, info);
return entry;
}
private static Entry setCommon(Entry entry, PartData info) {
if (entry == null || info == null) return null;
if (info.getName() != null) entry.setName(info.getName());
if (info.getSelectionMarkers() != null) {
Set<SelectionMarker> markers = getSelectionMarkers(info.getSelectionMarkers(), entry);
entry.setSelectionMarkers(markers);
}
if (info.getReferences() != null) entry.setReferences(info.getReferences());
if (StringUtils.isBlank(entry.getPartNumber())) entry.setPartNumber(info.getPartId());
Date currentTime = new Date();
if (entry.getCreationTime() == null) entry.setCreationTime(currentTime);
entry.setModificationTime(currentTime);
if (info.getOwnerEmail() != null) {
entry.setOwnerEmail(info.getOwnerEmail());
}
if (info.getOwner() != null) entry.setOwner(info.getOwner());
if (info.getCreatorEmail() != null) {
entry.setCreatorEmail(info.getCreatorEmail());
}
if (info.getCreator() != null) entry.setCreator(info.getCreator());
if (info.getStatus() == null) {
if (StringUtils.isBlank(entry.getStatus())) entry.setStatus("");
} else entry.setStatus(info.getStatus());
if (info.getAlias() != null) entry.setAlias(info.getAlias());
if (info.getBioSafetyLevel() == null) {
if (entry.getBioSafetyLevel() == null) entry.setBioSafetyLevel(0);
} else entry.setBioSafetyLevel(info.getBioSafetyLevel());
if (info.getShortDescription() != null) entry.setShortDescription(info.getShortDescription());
if (info.getLongDescription() != null) entry.setLongDescription(info.getLongDescription());
if (info.getIntellectualProperty() != null)
entry.setIntellectualProperty(info.getIntellectualProperty());
Set<Link> links = getLinks(info.getLinks(), entry);
entry.setLinks(links);
Visibility visibility = info.getVisibility();
if (visibility != null) entry.setVisibility(visibility.getValue());
// checking for null instead of blank since it could be cleared
if (info.getFundingSource() != null) entry.setFundingSource(info.getFundingSource());
if (info.getPrincipalInvestigator() != null)
entry.setPrincipalInvestigator(info.getPrincipalInvestigator());
if (info.getPrincipalInvestigatorEmail() != null)
entry.setPrincipalInvestigatorEmail(info.getPrincipalInvestigatorEmail());
if (info.getKeywords() != null) entry.setKeywords(info.getKeywords());
// parameters
List<Parameter> parameters = getParameters(info.getCustomFields(), entry);
entry.setParameters(parameters);
return entry;
}
