@Test
public void testStoreCodeSystemInvalidCyclicLoop() {
CodeSystem codeSystem = new CodeSystem();
codeSystem.setUrl(CS_URL);
codeSystem.setContent(CodeSystemContentMode.NOTPRESENT);
IIdType id =
myCodeSystemDao.create(codeSystem, new ServletRequestDetails()).getId().toUnqualified();
ResourceTable table = myResourceTableDao.findOne(id.getIdPartAsLong());
TermCodeSystemVersion cs = new TermCodeSystemVersion();
cs.setResource(table);
cs.setResourceVersionId(table.getVersion());
TermConcept parent = new TermConcept();
parent.setCodeSystem(cs);
parent.setCode("parent");
cs.getConcepts().add(parent);
TermConcept child = new TermConcept();
child.setCodeSystem(cs);
child.setCode("child");
parent.addChild(child, RelationshipTypeEnum.ISA);
child.addChild(parent, RelationshipTypeEnum.ISA);
try {
myTermSvc.storeNewCodeSystemVersion(table.getId(), "http://foo", cs);
fail();
} catch (InvalidRequestException e) {
assertEquals("CodeSystem contains circular reference around code parent", e.getMessage());
}
}
@Override
public BaseHttpClientInvocation invokeClient(Object[] theArgs) throws InternalErrorException {
IIdType idDt = (IIdType) theArgs[getIdParameterIndex()];
if (idDt == null) {
throw new NullPointerException("ID can not be null");
}
if (idDt.hasResourceType() == false) {
idDt = idDt.withResourceType(getResourceName());
} else if (getResourceName().equals(idDt.getResourceType()) == false) {
throw new InvalidRequestException(
"ID parameter has the wrong resource type, expected '"
+ getResourceName()
+ "', found: "
+ idDt.getResourceType());
}
HttpDeleteClientInvocation retVal = createDeleteInvocation(getContext(), idDt);
for (int idx = 0; idx < theArgs.length; idx++) {
IParameter nextParam = getParameters().get(idx);
nextParam.translateClientArgumentIntoQueryArgument(getContext(), theArgs[idx], null, null);
}
return retVal;
}
private IIdType createCodeSystem() {
CodeSystem codeSystem = new CodeSystem();
codeSystem.setUrl(CS_URL);
codeSystem.setContent(CodeSystemContentMode.NOTPRESENT);
IIdType id =
myCodeSystemDao.create(codeSystem, new ServletRequestDetails()).getId().toUnqualified();
ResourceTable table = myResourceTableDao.findOne(id.getIdPartAsLong());
TermCodeSystemVersion cs = new TermCodeSystemVersion();
cs.setResource(table);
cs.setResourceVersionId(table.getVersion());
TermConcept parentA = new TermConcept(cs, "ParentA");
cs.getConcepts().add(parentA);
TermConcept childAA = new TermConcept(cs, "childAA");
parentA.addChild(childAA, RelationshipTypeEnum.ISA);
TermConcept childAAA = new TermConcept(cs, "childAAA");
childAA.addChild(childAAA, RelationshipTypeEnum.ISA);
TermConcept childAAB = new TermConcept(cs, "childAAB");
childAA.addChild(childAAB, RelationshipTypeEnum.ISA);
TermConcept childAB = new TermConcept(cs, "childAB");
parentA.addChild(childAB, RelationshipTypeEnum.ISA);
TermConcept parentB = new TermConcept(cs, "ParentB");
cs.getConcepts().add(parentB);
myTermSvc.storeNewCodeSystemVersion(table.getId(), "http://foo", cs);
return id;
}
protected static void parseContentLocation(
FhirContext theContext, MethodOutcome theOutcomeToPopulate, String theLocationHeader) {
if (StringUtils.isBlank(theLocationHeader)) {
return;
}
IIdType id = theContext.getVersion().newIdType();
id.setValue(theLocationHeader);
theOutcomeToPopulate.setId(id);
}
@Test
public void testCreateDuplicateCodeSystemUri() {
CodeSystem codeSystem = new CodeSystem();
codeSystem.setUrl(CS_URL);
codeSystem.setContent(CodeSystemContentMode.NOTPRESENT);
IIdType id =
myCodeSystemDao.create(codeSystem, new ServletRequestDetails()).getId().toUnqualified();
ResourceTable table = myResourceTableDao.findOne(id.getIdPartAsLong());
TermCodeSystemVersion cs = new TermCodeSystemVersion();
cs.setResource(table);
cs.setResourceVersionId(table.getVersion());
myTermSvc.storeNewCodeSystemVersion(table.getId(), CS_URL, cs);
// Update
cs = new TermCodeSystemVersion();
TermConcept parentA = new TermConcept(cs, "ParentA");
cs.getConcepts().add(parentA);
id = myCodeSystemDao.update(codeSystem, new ServletRequestDetails()).getId().toUnqualified();
table = myResourceTableDao.findOne(id.getIdPartAsLong());
cs.setResource(table);
cs.setResourceVersionId(table.getVersion());
myTermSvc.storeNewCodeSystemVersion(table.getId(), CS_URL, cs);
// Try to update to a different resource
codeSystem = new CodeSystem();
codeSystem.setUrl(CS_URL);
codeSystem.setContent(CodeSystemContentMode.NOTPRESENT);
id = myCodeSystemDao.create(codeSystem, new ServletRequestDetails()).getId().toUnqualified();
table = myResourceTableDao.findOne(id.getIdPartAsLong());
cs.setResource(table);
cs.setResourceVersionId(table.getVersion());
try {
myTermSvc.storeNewCodeSystemVersion(table.getId(), CS_URL, cs);
fail();
} catch (UnprocessableEntityException e) {
assertThat(
e.getMessage(),
containsString(
"Can not create multiple code systems with URI \"http://example.com/my_code_system\", already have one with resource ID: CodeSystem/"));
}
}
@Test
public void testFindCodesBelowA() {
IIdType id = createCodeSystem();
Set<TermConcept> concepts;
Set<String> codes;
concepts =
myTermSvc.findCodesBelow(id.getIdPartAsLong(), id.getVersionIdPartAsLong(), "ParentA");
codes = toCodes(concepts);
assertThat(codes, containsInAnyOrder("ParentA", "childAA", "childAAA", "childAAB", "childAB"));
concepts =
myTermSvc.findCodesBelow(id.getIdPartAsLong(), id.getVersionIdPartAsLong(), "childAA");
codes = toCodes(concepts);
assertThat(codes, containsInAnyOrder("childAA", "childAAA", "childAAB"));
// Try an unknown code
concepts =
myTermSvc.findCodesBelow(id.getIdPartAsLong(), id.getVersionIdPartAsLong(), "FOO_BAD_CODE");
codes = toCodes(concepts);
assertThat(codes, empty());
}
private Object returnResponse(
IRestfulServer<?> theServer,
RequestDetails theRequest,
MethodOutcome response,
IBaseResource originalOutcome,
IBaseResource resource)
throws IOException {
boolean allowPrefer = false;
int operationStatus = getOperationStatus(response);
IBaseResource outcome = originalOutcome;
if (ourOperationsWhichAllowPreferHeader.contains(getRestOperationType())) {
allowPrefer = true;
}
if (resource != null && allowPrefer) {
String prefer = theRequest.getHeader(Constants.HEADER_PREFER);
PreferReturnEnum preferReturn = RestfulServerUtils.parsePreferHeader(prefer);
if (preferReturn != null) {
if (preferReturn == PreferReturnEnum.REPRESENTATION) {
outcome = resource;
}
}
}
for (int i = theServer.getInterceptors().size() - 1; i >= 0; i--) {
IServerInterceptor next = theServer.getInterceptors().get(i);
boolean continueProcessing = next.outgoingResponse(theRequest, outcome);
if (!continueProcessing) {
return null;
}
}
IRestfulResponse restfulResponse = theRequest.getResponse();
if (response != null) {
if (response.getResource() != null) {
restfulResponse.setOperationResourceLastUpdated(
RestfulServerUtils.extractLastUpdatedFromResource(response.getResource()));
}
IIdType responseId = response.getId();
if (responseId != null && responseId.getResourceType() == null && responseId.hasIdPart()) {
responseId = responseId.withResourceType(getResourceName());
}
if (responseId != null) {
String serverBase = theRequest.getFhirServerBase();
responseId =
RestfulServerUtils.fullyQualifyResourceIdOrReturnNull(
theServer, resource, serverBase, responseId);
restfulResponse.setOperationResourceId(responseId);
}
}
boolean prettyPrint = RestfulServerUtils.prettyPrintResponse(theServer, theRequest);
Set<SummaryEnum> summaryMode = Collections.emptySet();
return restfulResponse.streamResponseAsResource(
outcome, prettyPrint, summaryMode, operationStatus, null, theRequest.isRespondGzip(), true);
// return theRequest.getResponse().returnResponse(ParseAction.create(outcome), operationStatus,
// allowPrefer, response, getResourceName());
}
