/** * Obtains an object which represents a given sub-image of a plane within the file. * * @param id The path to the file. * @param planeNumber The plane or section within the file to obtain. * @param buf Pre-allocated buffer which has a <i>length</i> that can fit the byte count of the * sub-image. * @param x X coordinate of the upper-left corner of the sub-image * @param y Y coordinate of the upper-left corner of the sub-image * @param w width of the sub-image * @param h height of the sub-image * @return an object which represents the sub-image of the plane. * @throws FormatException If there is an error parsing the file. * @throws IOException If there is an error reading from the file or acquiring permissions to read * the file. */ public PixelData openPlane2D(String id, int planeNumber, byte[] buf, int x, int y, int w, int h) throws FormatException, IOException { // FIXME: HACK! The ChannelSeparator isn't exactly what one would call // "complete" so we have to work around the fact that it still copies // all of the plane data (all three channels) from the file if the file // is RGB. ByteBuffer plane; if (iReader.isRGB() || isLeicaReader()) { // System.err.println("RGB, not using cached buffer."); byte[] bytePlane = openBytes(planeNumber, x, y, w, h); plane = ByteBuffer.wrap(bytePlane); } else { // System.err.println("Not RGB, using cached buffer."); plane = ByteBuffer.wrap(openBytes(planeNumber, buf, x, y, w, h)); } plane.order(isLittleEndian() ? ByteOrder.LITTLE_ENDIAN : ByteOrder.BIG_ENDIAN); return new PixelData(FormatTools.getPixelTypeString(getPixelType()), plane); }