/** Shut down communication with the autosampler. */
public void disconnect() {
if (m_reader != null) {
m_reader.quit();
m_reader.interrupt();
}
if (m_sender != null) {
m_sender.quit();
m_sender.interrupt();
}
if (m_statusPoller != null) {
m_statusPoller.quit();
m_statusPoller.interrupt();
}
if (m_CryoSocket != null) {
m_CryoSocket.disconnect();
m_CryoSocket = null;
}
}
public void run() {
try {
// An arbitrary buffer size.
char[] chbuf = new char[4096];
while (keepRunning) {
int numchars = reader.read(chbuf);
if (numchars == -1) {
keepRunning = false;
} else if (keepRunning) {
writer.write(chbuf, 0, numchars);
if (!reader.ready()) {
writer.flush();
}
}
}
} catch (IOException ex) {
println("Error when linking JVM output to terminal window input.");
}
}
/** Open communication with the cryobay. */
public void connect(String host, int port) {
m_CryoSocket = new CryoMonitorSocket(host, port); // startup delay is here
m_reader = new Reader();
m_reader.start();
}
@Override
public void run() {
try {
// initialize the statusbar
status.removeAll();
JProgressBar progress = new JProgressBar();
progress.setMinimum(0);
progress.setMaximum((int) f.length());
status.add(progress);
status.revalidate();
// try to start reading
Reader in = new FileReader(f);
char[] buff = new char[4096];
int nch;
while ((nch = in.read(buff, 0, buff.length)) != -1) {
doc.insertString(doc.getLength(), new String(buff, 0, nch), null);
progress.setValue(progress.getValue() + nch);
}
} catch (IOException e) {
final String msg = e.getMessage();
SwingUtilities.invokeLater(
new Runnable() {
public void run() {
JOptionPane.showMessageDialog(
getFrame(),
"Could not open file: " + msg,
"Error opening file",
JOptionPane.ERROR_MESSAGE);
}
});
} catch (BadLocationException e) {
System.err.println(e.getMessage());
}
doc.addUndoableEditListener(undoHandler);
// we are done... get rid of progressbar
status.removeAll();
status.revalidate();
resetUndoManager();
if (elementTreePanel != null) {
SwingUtilities.invokeLater(
new Runnable() {
public void run() {
elementTreePanel.setEditor(getEditor());
}
});
}
}
private void copy(@NotNull Reader from, @NotNull Writer to) throws IOException {
char[] buf = new char[2048];
int cnt;
while ((cnt = from.read(buf)) != -1) {
if (logger.isDebugEnabled()) logger.debug("buf=" + buf);
to.write(buf, 0, cnt);
}
}
public void run() {
try {
// initialize the statusbar
status.removeAll();
JProgressBar progress = new JProgressBar();
progress.setMinimum(0);
progress.setMaximum((int) f2.length());
status.add(progress);
status.revalidate();
// try to start reading
Reader in = new FileReader(f2);
char[] buff = new char[4096];
int nch;
while ((nch = in.read(buff, 0, buff.length)) != -1) {
doc2.insertString(doc2.getLength(), new String(buff, 0, nch), null);
progress.setValue(progress.getValue() + nch);
}
// we are done... get rid of progressbar
// doc2.addUndoableEditListener(undoHandler);
status.removeAll();
status.revalidate();
// resetUndoManager();
} catch (IOException e) {
System.err.println("TextViewer:FileLoader " + e.toString());
} catch (BadLocationException e) {
System.err.println("TextViewer:FileLoader " + e.getMessage());
}
/* aa
if (elementTreePanel != null) {
SwingUtilities.invokeLater(new Runnable() {
public void run() {
elementTreePanel.setEditor(getEditor());
}
});
}
*/
}
