@Transactional(readOnly = false)
@Override
public ThesaurusConcept destroyThesaurusConcept(ThesaurusConcept object) {
if (object.getStatus() == ConceptStatusEnum.CANDIDATE.getStatus()
|| object.getStatus() == ConceptStatusEnum.REJECTED.getStatus()) {
List<ThesaurusTerm> terms = thesaurusTermDAO.findTermsByConceptId(object.getIdentifier());
for (ThesaurusTerm term : terms) {
term.setConcept(null);
thesaurusTermDAO.update(term);
}
List<ThesaurusConcept> childrenConcepts =
getChildrenByConceptId(object.getIdentifier(), null);
for (ThesaurusConcept childConcept : childrenConcepts) {
childConcept.getParentConcepts().remove(object);
thesaurusConceptDAO.update(childConcept);
}
List<ThesaurusConcept> rootChildrenConcepts = thesaurusConceptDAO.getAllRootChildren(object);
for (ThesaurusConcept rootChild : rootChildrenConcepts) {
rootChild.getRootConcepts().remove(object);
thesaurusConceptDAO.update(rootChild);
}
List<ThesaurusArray> arrays =
thesaurusArrayDAO.getConceptSuperOrdinateArrays(object.getIdentifier());
for (ThesaurusArray array : arrays) {
thesaurusArrayDAO.delete(array);
}
List<Alignment> alignments = alignmentDAO.findByTargetConceptId(object.getIdentifier());
for (Alignment alignment : alignments) {
if (alignment.getTargetConcepts().size() <= 1) {
alignmentDAO.delete(alignment);
}
}
return thesaurusConceptDAO.delete(object);
} else {
throw new BusinessException(
"It's not possible to delete a concept with a status different from candidate or rejected",
"delete-concept");
}
}
private void updateConceptTerms(ThesaurusConcept concept, List<ThesaurusTerm> terms) {
List<ThesaurusTerm> returnTerms = new ArrayList<ThesaurusTerm>();
for (ThesaurusTerm thesaurusTerm : terms) {
// We always set validated status to the terms that are joined to a
// concept
thesaurusTerm.setStatus(TermStatusEnum.VALIDATED.getStatus());
thesaurusTerm.setConcept(concept);
returnTerms.add(thesaurusTermDAO.update(thesaurusTerm));
}
}
@Override
public List<ThesaurusTerm> getConceptPreferredTerms(String conceptId) {
logger.debug("ConceptId : " + conceptId);
List<ThesaurusTerm> preferredTerms = thesaurusTermDAO.getConceptPreferredTerms(conceptId);
if (preferredTerms == null || preferredTerms.size() == 0) {
throw new BusinessException(
"The concept " + conceptId + "has no preferred term",
"concept-does-not-have-a-preferred-term");
}
return preferredTerms;
}
@Override
public ThesaurusTerm getConceptPreferredTerm(String conceptId) {
logger.debug("ConceptId : " + conceptId);
ThesaurusTerm preferredTerm = thesaurusTermDAO.getConceptPreferredTerm(conceptId);
if (preferredTerm == null) {
throw new BusinessException(
"The concept " + conceptId + "has no preferred term",
"concept-does-not-have-a-preferred-term");
}
return preferredTerm;
}
@Override
public List<ThesaurusTerm> getConceptNotPreferredTerms(String conceptId) {
List<ThesaurusTerm> notPreferredTerms = thesaurusTermDAO.getConceptNotPreferredTerms(conceptId);
return notPreferredTerms;
}
@Transactional(readOnly = false)
@Override
public ThesaurusConcept updateThesaurusConcept(
ThesaurusConcept object,
List<ThesaurusTerm> terms,
List<AssociativeRelationship> associatedConcepts,
List<ConceptHierarchicalRelationship> hierarchicalRelationships,
List<ThesaurusConcept> childrenConceptToDetach,
List<ThesaurusConcept> childrenConceptToAttach,
List<Alignment> alignments) {
thesaurusTermUtils.checkTerms(terms);
alignmentService.saveExternalThesauruses(alignments);
if (StringUtils.isNotEmpty(object.getIdentifier())) {
List<ThesaurusTerm> existingTerms =
thesaurusTermDAO.findTermsByConceptId(object.getIdentifier());
for (ThesaurusTerm existingTerm : existingTerms) {
if (!terms.contains(existingTerm)) {
ThesaurusTerm term = thesaurusTermDAO.getById(existingTerm.getIdentifier());
term.setConcept(null);
thesaurusTermDAO.update(term);
logger.info("Marking Term with ID " + existingTerm.getIdentifier() + " as SandBoxed.");
}
}
} else {
object.setIdentifier(generatorService.generate(ThesaurusConcept.class));
for (ConceptHierarchicalRelationship hierarchicalRelationship : hierarchicalRelationships) {
hierarchicalRelationship.getIdentifier().setChildconceptid(object.getIdentifier());
}
for (AssociativeRelationship relation : associatedConcepts) {
relation.getIdentifier().setConcept1(object.getIdentifier());
}
}
List<ThesaurusConcept> allRecursiveChild =
getRecursiveChildrenByConceptId(object.getIdentifier());
List<ThesaurusConcept> allRecursiveParents =
getRecursiveParentsByConceptId(object.getIdentifier());
object =
conceptHierarchicalRelationshipServiceUtil.saveHierarchicalRelationship(
object,
hierarchicalRelationships,
allRecursiveParents,
allRecursiveChild,
childrenConceptToDetach,
childrenConceptToAttach);
if (object.getStatus() == ConceptStatusEnum.CANDIDATE.getStatus()) {
// We can set status = candidate only if concept has not relation
// (both hierarchical or associative)
if (!associatedConcepts.isEmpty()
|| !object.getParentConcepts().isEmpty()
|| hasChildren(object.getIdentifier())) {
throw new BusinessException(
"A concept must not have a status candidate when it still have relations",
"concept-status-candidate-relation");
}
}
if (object.getStatus() == ConceptStatusEnum.VALIDATED.getStatus()) {
// Test if parent concepts are validated
Set<ThesaurusConcept> parents = object.getParentConcepts();
for (ThesaurusConcept parent : parents) {
if (parent.getStatus() != ConceptStatusEnum.VALIDATED.getStatus()) {
throw new BusinessException(
"A concept cannot have a parent which status is not validated",
"concept-parent-not-validated");
}
}
}
ThesaurusConcept concept = thesaurusConceptDAO.update(object);
updateConceptTerms(concept, terms);
alignmentService.saveAlignments(concept, alignments);
if (!alignments.isEmpty()) {
alignmentService.deleteExternalThesauruses();
}
return thesaurusConceptDAO.update(saveAssociativeRelationship(concept, associatedConcepts));
}
/*
* (non-Javadoc)
*
* @see
* fr.mcc.ginco.services.IThesaurusConceptService#getConceptPreferredTerm
* (java.lang.String, java.lang.String)
*/
@Override
public ThesaurusTerm getConceptPreferredTerm(String conceptId, String languageId) {
logger.debug("ConceptId : " + conceptId);
ThesaurusTerm preferredTerm = thesaurusTermDAO.getConceptPreferredTerm(conceptId, languageId);
return preferredTerm;
}
