private void buildJavaScriptStudyList(
JSONObject studies,
String key,
boolean canProvisionAll,
Collection<Study> provisionableStudies)
throws JSONException {
List<JSONObject> a = new ArrayList<JSONObject>(1 + provisionableStudies.size());
if (canProvisionAll) {
a.add(
new JSONObject(
new MapBuilder<String, String>()
.put("identifier", JSON_ALL_SCOPE_IDENTIFIER)
.put("name", allName(ScopeType.STUDY))
.toMap()));
}
for (Study study : provisionableStudies) {
a.add(
new JSONObject(
new MapBuilder<String, String>()
.put("identifier", study.getAssignedIdentifier())
.put("name", study.getName())
.toMap()));
}
Collections.sort(a, StudyJSONObjectComparator.INSTANCE);
studies.put(key, a);
}
@Override
protected void setUp() throws Exception {
super.setUp();
pscUserService = registerMockFor(PscUserService.class);
ssaXmlSerializer = registerNiceMockFor(StudySubjectAssignmentXmlSerializer.class);
Site nu = createSite("NU", "IL036");
Study a = createBasicTemplate("A");
StudySite a_nu = createStudySite(a, nu);
a_nu.approveAmendment(a.getAmendment(), new Date());
a_nu_1 = createAssignment(a_nu, createSubject("First", "One"));
StudySegment ae0s1 = a.getPlannedCalendar().getEpochs().get(0).getStudySegments().get(0);
ScheduledStudySegment scheduledStudySegment = createScheduledStudySegment(ae0s1);
a_nu_1.getScheduledCalendar().addStudySegment(scheduledStudySegment);
jo =
new PscUserBuilder("jo")
.add(PscRole.STUDY_SUBJECT_CALENDAR_MANAGER)
.forAllSites()
.forAllStudies()
.toUser();
alice =
new PscUserBuilder("alice")
.add(PscRole.STUDY_SUBJECT_CALENDAR_MANAGER)
.forAllSites()
.forAllStudies()
.toUser();
setCurrentUser(alice);
UriTemplateParameters.USERNAME.putIn(request, "jo");
expect(pscUserService.getAuthorizableUser("jo")).andStubReturn(jo);
expect(pscUserService.getManagedAssignments(jo, alice))
.andStubReturn(createExpectedUssars(jo, a_nu_1));
}
public void testRevisionWorkflowWhenInDevelopment() throws Exception {
study.setDevelopmentAmendment(new Amendment());
RevisionWorkflowStatus actual = actual().getRevisionWorkflowStatus();
assertNotNull("Should be present", actual);
assertEquals(
"For wrong study",
study.getAssignedIdentifier(),
actual.getRevisedStudy().getAssignedIdentifier());
}
@Override
protected void setUp() throws Exception {
super.setUp();
study = assignIds(createBasicTemplate("CRM 114"));
for (Epoch e : study.getPlannedCalendar().getEpochs()) {
for (StudySegment segment : e.getStudySegments()) {
Period p = createPeriod(1, 1, 1);
p.addPlannedActivity(createPlannedActivity("T", 1));
segment.addPeriod(p);
}
}
nu = createSite("NU", "IL675");
vanderbilt = createSite("VU", "TN054");
StudySite ss = study.addSite(nu);
ss.approveAmendment(study.getAmendment(), new Date());
configuration = registerMockFor(Configuration.class);
}
public void testStudySiteWorkflowsHasOnePerVisibleStudySite() throws Exception {
study.addSite(createSite("mayo", "MN567")); // not visible
List<StudySiteWorkflowStatus> actual = actual().getStudySiteWorkflowStatuses();
assertEquals("Wrong number of statuses", 1, actual.size());
assertEquals(
"1st status is for wrong study site",
"IL675",
actual.get(0).getStudySite().getSite().getAssignedIdentifier());
}
public void testRemoveDetachedNodesWhileIterating() {
Study s = Fixtures.createReleasedTemplate();
Delta pc = Delta.createDeltaFor(s.getPlannedCalendar());
Delta epoch2 = Delta.createDeltaFor(s.getPlannedCalendar().getEpochs().get(0));
StudySegment segment1 = s.getPlannedCalendar().getEpochs().get(0).getStudySegments().get(1);
Delta ss1 = Delta.createDeltaFor(segment1);
Delta ss2 =
Delta.createDeltaFor(s.getPlannedCalendar().getEpochs().get(0).getStudySegments().get(2));
List<Delta<?>> deltaList = new ArrayList<Delta<?>>();
deltaList.add(ss1);
deltaList.add(epoch2);
deltaList.add(pc);
deltaList.add(ss2);
expect(templateService.findEquivalentChild(s, pc.getNode())).andReturn(pc.getNode());
expect(templateService.findEquivalentChild(s, epoch2.getNode())).andReturn(epoch2.getNode());
expect(templateService.findEquivalentChild(s, ss1.getNode())).andReturn(ss1.getNode());
expect(templateService.findEquivalentChild(s, ss2.getNode())).andReturn(ss2.getNode());
replayMocks();
DeltaIterator di = new DeltaIterator(deltaList, s, templateService, false);
List<Delta> encountered = new LinkedList<Delta>();
while (di.hasNext()) {
Delta delta = di.next();
encountered.add(delta);
if (delta == epoch2) {
segment1.setParent(null);
}
}
assertEquals("Wrong number of deltas encountered: " + encountered, 3, encountered.size());
assertEquals("Wrong delta 0", pc, encountered.get(0));
assertEquals("Wrong delta 1", epoch2, encountered.get(1));
assertEquals("Wrong delta 2", ss2, encountered.get(2));
verifyMocks();
}
public void testIsNotDevelopmentWhenUserCannotSeeDevelopment() throws Exception {
study.setDevelopmentAmendment(new Amendment());
SuiteRoleMembership mem =
AuthorizationScopeMappings.createSuiteRoleMembership(
PscRole.STUDY_SITE_PARTICIPATION_ADMINISTRATOR)
.forSites(nu, vanderbilt)
.forAllStudies();
StudyWorkflowStatus actual =
new StudyWorkflowStatus(
study,
AuthorizationObjectFactory.createPscUser("jo", mem),
new WorkflowMessageFactory(),
Fixtures.getTestingDeltaService(),
configuration);
assertEquals("Unexpected availability present", 1, actual.getTemplateAvailabilities().size());
assertFalse(
"Unexpected availability present",
actual.getTemplateAvailabilities().contains(TemplateAvailability.IN_DEVELOPMENT));
}
@Override
public void doInit() {
super.doInit();
study = studyDao.getByAssignedIdentifier(STUDY_IDENTIFIER.extractFrom(getRequest()));
log.debug("Resolved study from {} as {}", STUDY_IDENTIFIER.extractFrom(getRequest()), study);
site = siteDao.getByAssignedIdentifier(SITE_IDENTIFIER.extractFrom(getRequest()));
log.debug("Resolved site from {} as {}", SITE_IDENTIFIER.extractFrom(getRequest()), site);
if (study != null && site != null) {
studySite = study.getStudySite(site);
}
setExisting(studySite != null);
log.debug("Site {} participating in study", isExisting() ? "is" : "is not");
getVariants().add(new Variant(MediaType.TEXT_XML));
getAllowedMethods().add(Method.GET);
getAllowedMethods().add(Method.POST);
}
public void testIncludesAssignSitesMessageWhenNoSites() throws Exception {
study.getStudySites().clear();
assertMessage(WorkflowStep.ASSIGN_SITE);
}
public void testDoesNotIncludeReleaseMessageWhenReleasedAtLeastOnce() throws Exception {
study.setDevelopmentAmendment(new Amendment());
assertNull(actual().getMessagesIgnoringRevisionMessages());
}
public void testIncludesIdentifierMessageWhenHasTemporaryIdentifier() throws Exception {
study.setAssignedIdentifier("[ABC 1450]");
assertMessage(WorkflowStep.SET_ASSIGNED_IDENTIFIER);
}
public void testDoesNotIncludeIdentifierMessageWhenDoesNotHaveTemporaryIdentifier()
throws Exception {
study.setAssignedIdentifier("ABC 1450");
assertNoMessages();
}
public void testTemplateAvailabilityIsAvailableAndInDevelopment() throws Exception {
study.setDevelopmentAmendment(new Amendment());
assertAvailabilityPresent(TemplateAvailability.AVAILABLE);
assertAvailabilityPresent(TemplateAvailability.IN_DEVELOPMENT);
assertAvailabilityNotPresent(TemplateAvailability.PENDING);
}
public void testDetailOrder() {
Study s = Fixtures.createReleasedTemplate();
Period period = Fixtures.createPeriod("period1", 1, 10, 2);
PlannedActivity plannedActivity = Fixtures.createPlannedActivity("activity", 3);
PlannedActivityLabel plannedActivityLabel = Fixtures.createPlannedActivityLabel("label");
period.addPlannedActivity(plannedActivity);
plannedActivity.addPlannedActivityLabel(plannedActivityLabel);
s.getPlannedCalendar().getEpochs().get(0).getStudySegments().get(0).getPeriods().add(period);
Delta studyDelta = Delta.createDeltaFor(s.getPlannedCalendar().getStudy());
Delta epochDelta = Delta.createDeltaFor(s.getPlannedCalendar().getEpochs().get(0));
Delta studySegmentDelta =
Delta.createDeltaFor(s.getPlannedCalendar().getEpochs().get(0).getStudySegments().get(1));
Delta periodDelta =
Delta.createDeltaFor(
s.getPlannedCalendar()
.getEpochs()
.get(0)
.getStudySegments()
.get(0)
.getPeriods()
.last());
Delta plannedActivityDelta =
Delta.createDeltaFor(
s.getPlannedCalendar()
.getEpochs()
.get(0)
.getStudySegments()
.get(0)
.getPeriods()
.first()
.getPlannedActivities()
.get(0));
Delta plannedActivityLabelDelta =
Delta.createDeltaFor(
s.getPlannedCalendar()
.getEpochs()
.get(0)
.getStudySegments()
.get(0)
.getPeriods()
.first()
.getPlannedActivities()
.get(0)
.getPlannedActivityLabels()
.first());
List<Delta<?>> listOfDeltas = new ArrayList<Delta<?>>();
listOfDeltas.add(plannedActivityDelta);
listOfDeltas.add(periodDelta);
listOfDeltas.add(epochDelta);
listOfDeltas.add(studyDelta);
listOfDeltas.add(studySegmentDelta);
listOfDeltas.add(plannedActivityLabelDelta);
expect(templateService.findEquivalentChild(s, studyDelta.getNode())).andReturn(s);
expect(templateService.findEquivalentChild(s, periodDelta.getNode())).andReturn(null);
expect(templateService.findEquivalentChild(s, epochDelta.getNode()))
.andReturn(epochDelta.getNode());
expect(templateService.findEquivalentChild(s, studySegmentDelta.getNode()))
.andReturn(studySegmentDelta.getNode());
expect(templateService.findEquivalentChild(s, plannedActivityDelta.getNode())).andReturn(null);
expect(templateService.findEquivalentChild(s, plannedActivityLabelDelta.getNode()))
.andReturn(plannedActivityLabelDelta.getNode());
replayMocks();
DeltaIterator di = new DeltaIterator(listOfDeltas, s, templateService, false);
assertSame("studyDelta is not the first element", studyDelta, di.next());
assertSame("epochDelta is not the second element", epochDelta, di.next());
assertSame("studySegmentDelta is not the third element", studySegmentDelta, di.next());
assertSame("periodDelta is not the forth element", plannedActivityLabelDelta, di.next());
assertFalse("deltaIterator has more elements ", di.hasNext());
verifyMocks();
}
public void testNotAvailableWhenReleasedButHasStudyMessages() throws Exception {
study.getStudySites().clear();
assertAvailabilityNotPresent(TemplateAvailability.AVAILABLE);
}
public void testBothAvailableAndPendingWhenOneStudySiteIsReadyAndAnotherIsNot() throws Exception {
setId(81, study.addSite(vanderbilt));
assertAvailabilityPresent(TemplateAvailability.AVAILABLE);
assertAvailabilityPresent(TemplateAvailability.PENDING);
}
public void testIsNotAvailableWhenNotReleased() throws Exception {
study.setAmendment(null);
assertAvailabilityNotPresent(TemplateAvailability.AVAILABLE);
}
public void testIsPendingWhenReleasedAndHasStudyMessages() throws Exception {
study.getStudySites().clear();
assertAvailabilityPresent(TemplateAvailability.PENDING);
}
public void testStudySiteWorkflowsEmptyWhenNoStudySites() throws Exception {
study.getStudySites().clear();
List<StudySiteWorkflowStatus> actual = actual().getStudySiteWorkflowStatuses();
assertNotNull("Should be a collection", actual);
assertTrue("But an empty one", actual.isEmpty());
}
public void testIsDevelopmentWhenUserCanSeeDevelopment() throws Exception {
study.setDevelopmentAmendment(new Amendment());
assertAvailabilityPresent(TemplateAvailability.IN_DEVELOPMENT);
}
public void testIsNotDevelopmentWhenNotInDevelopment() throws Exception {
study.setDevelopmentAmendment(null);
assertAvailabilityNotPresent(TemplateAvailability.IN_DEVELOPMENT);
}
