Example #1
0
 byte[] getJar(String address) {
   // System.out.println("getJar: "+address);
   byte[] data;
   try {
     URL url = new URL(address);
     IJ.showStatus("Connecting to " + IJ.URL);
     URLConnection uc = url.openConnection();
     int len = uc.getContentLength();
     if (IJ.debugMode) IJ.log("Updater (url): " + address + " " + len);
     if (len <= 0) return null;
     String name = address.contains("wsr") ? "daily build (" : "ij.jar (";
     IJ.showStatus("Downloading " + name + IJ.d2s((double) len / 1048576, 1) + "MB)");
     InputStream in = uc.getInputStream();
     data = new byte[len];
     int n = 0;
     while (n < len) {
       int count = in.read(data, n, len - n);
       if (count < 0) throw new EOFException();
       n += count;
       IJ.showProgress(n, len);
     }
     in.close();
   } catch (IOException e) {
     if (IJ.debugMode) IJ.log("" + e);
     return null;
   }
   if (IJ.debugMode) IJ.wait(6000);
   return data;
 }
Example #2
0
 public Set<String> listResources(String subdir) {
   try {
     Set<String> result = new HashSet<String>();
     if (resourceURL != null) {
       String protocol = resourceURL.getProtocol();
       if (protocol.equals("jar")) {
         String resPath = resourceURL.getPath();
         int pling = resPath.lastIndexOf("!");
         URL jarURL = new URL(resPath.substring(0, pling));
         String resDirInJar = resPath.substring(pling + 2);
         String prefix = resDirInJar + subdir + "/";
         // System.out.printf("BaseMod.listResources: looking for names starting with %s\n",
         // prefix);
         JarFile jar = new JarFile(new File(jarURL.toURI()));
         Enumeration<JarEntry> entries = jar.entries();
         while (entries.hasMoreElements()) {
           String name = entries.nextElement().getName();
           if (name.startsWith(prefix) && !name.endsWith("/") && !name.contains("/.")) {
             // System.out.printf("BaseMod.listResources: name = %s\n", name);
             result.add(name.substring(prefix.length()));
           }
         }
       } else throw new RuntimeException("Resource URL protocol " + protocol + " not supported");
     }
     return result;
   } catch (Exception e) {
     throw new RuntimeException(e);
   }
 }
Example #3
0
  static void openURL(
      JopSession session, String name, boolean newFrame, String frameName, String bookmark) {
    System.out.println("openURL " + name);
    Object root = session.getRoot();

    // Replace any URL symbol
    name = replaceUrlSymbol(session, name);
    try {
      String url_str = null;
      if (name.substring(0, 5).equals("http:")) {
        url_str = name;
        if (url_str.lastIndexOf(".html") == -1
            && url_str.lastIndexOf(".shtml") == -1
            && url_str.lastIndexOf(".htm") == -1
            && url_str.lastIndexOf(".pdf") == -1) url_str = url_str + ".html";
      } else if (name.startsWith("$pwr_doc/")) {
        URL current = ((JApplet) root).getDocumentBase();
        String current_str = current.toString();
        int idx1 = current_str.indexOf('/');
        if (idx1 != -1 && current_str.length() > idx1 + 1) {
          idx1 = current_str.indexOf('/', idx1 + 1);
          if (idx1 != -1 && current_str.length() > idx1 + 1) {
            idx1 = current_str.indexOf('/', idx1 + 1);
            if (idx1 != -1 && current_str.length() > idx1 + 1) {
              url_str = current_str.substring(0, idx1 + 1) + "pwr_doc/" + name.substring(9);
              if (url_str.lastIndexOf(".html") == -1
                  && url_str.lastIndexOf(".shtml") == -1
                  && url_str.lastIndexOf(".htm") == -1
                  && url_str.lastIndexOf(".pdf") == -1) url_str = url_str + ".html";
            }
          }
        }
      } else {
        URL current = ((JApplet) root).getCodeBase();
        String current_str = current.toString();
        int idx1 = current_str.lastIndexOf('/');
        int idx2 = current_str.lastIndexOf(':');
        int idx = idx1;
        if (idx2 > idx) idx = idx2;
        String path = current_str.substring(0, idx + 1);
        if (name.lastIndexOf(".html") == -1
            && name.lastIndexOf(".shtml") == -1
            && name.lastIndexOf(".htm") == -1
            && name.lastIndexOf(".pdf") == -1) url_str = new String(path + name + ".html");
        else url_str = new String(path + name);
        if (bookmark != null) url_str += "#" + bookmark;
      }
      System.out.println("Opening URL: " + url_str);

      URL url = new URL(url_str);
      AppletContext appCtx = ((JApplet) root).getAppletContext();
      if (newFrame) appCtx.showDocument(url, "_blank");
      else if (frameName != null) appCtx.showDocument(url, frameName);
      else appCtx.showDocument(url, "_self");
    } catch (MalformedURLException e) {
      System.out.println("MalformedURL : " + name);
    }
  }
 protected void addPathFile(final File pathComponent) throws IOException {
   if (!this.pathComponents.contains(pathComponent)) {
     this.pathComponents.addElement(pathComponent);
   }
   if (pathComponent.isDirectory()) {
     return;
   }
   final String absPathPlusTimeAndLength =
       pathComponent.getAbsolutePath()
           + pathComponent.lastModified()
           + "-"
           + pathComponent.length();
   String classpath = AntClassLoader.pathMap.get(absPathPlusTimeAndLength);
   if (classpath == null) {
     JarFile jarFile = null;
     try {
       jarFile = new JarFile(pathComponent);
       final Manifest manifest = jarFile.getManifest();
       if (manifest == null) {
         return;
       }
       classpath = manifest.getMainAttributes().getValue(Attributes.Name.CLASS_PATH);
     } finally {
       if (jarFile != null) {
         jarFile.close();
       }
     }
     if (classpath == null) {
       classpath = "";
     }
     AntClassLoader.pathMap.put(absPathPlusTimeAndLength, classpath);
   }
   if (!"".equals(classpath)) {
     final URL baseURL = AntClassLoader.FILE_UTILS.getFileURL(pathComponent);
     final StringTokenizer st = new StringTokenizer(classpath);
     while (st.hasMoreTokens()) {
       final String classpathElement = st.nextToken();
       final URL libraryURL = new URL(baseURL, classpathElement);
       if (!libraryURL.getProtocol().equals("file")) {
         this.log(
             "Skipping jar library "
                 + classpathElement
                 + " since only relative URLs are supported by this"
                 + " loader",
             3);
       } else {
         final String decodedPath = Locator.decodeUri(libraryURL.getFile());
         final File libraryFile = new File(decodedPath);
         if (!libraryFile.exists() || this.isInPath(libraryFile)) {
           continue;
         }
         this.addPathFile(libraryFile);
       }
     }
   }
 }
  private static String[] findStandardMBeans(URL codeBase) throws Exception {
    Set<String> names;
    if (codeBase.getProtocol().equalsIgnoreCase("file") && codeBase.toString().endsWith("/"))
      names = findStandardMBeansFromDir(codeBase);
    else names = findStandardMBeansFromJar(codeBase);

    Set<String> standardMBeanNames = new TreeSet<String>();
    for (String name : names) {
      if (name.endsWith("MBean")) {
        String prefix = name.substring(0, name.length() - 5);
        if (names.contains(prefix)) standardMBeanNames.add(prefix);
      }
    }
    return standardMBeanNames.toArray(new String[0]);
  }
Example #6
0
 String openUrlAsString(String address, int maxLines) {
   StringBuffer sb;
   try {
     URL url = new URL(address);
     InputStream in = url.openStream();
     BufferedReader br = new BufferedReader(new InputStreamReader(in));
     sb = new StringBuffer();
     int count = 0;
     String line;
     while ((line = br.readLine()) != null && count++ < maxLines) sb.append(line + "\n");
     in.close();
   } catch (IOException e) {
     sb = null;
   }
   return sb != null ? new String(sb) : null;
 }
Example #7
0
 String[] openUrlAsList(String address) {
   Vector v = new Vector();
   try {
     URL url = new URL(address);
     InputStream in = url.openStream();
     BufferedReader br = new BufferedReader(new InputStreamReader(in));
     String line;
     while (true) {
       line = br.readLine();
       if (line == null) break;
       if (!line.equals("")) v.addElement(line);
     }
     br.close();
   } catch (Exception e) {
   }
   String[] lines = new String[v.size()];
   v.copyInto((String[]) lines);
   return lines;
 }
 private static Set<String> findStandardMBeansFromJar(URL codeBase) throws Exception {
   InputStream is = codeBase.openStream();
   JarInputStream jis = new JarInputStream(is);
   Set<String> names = new TreeSet<String>();
   JarEntry entry;
   while ((entry = jis.getNextJarEntry()) != null) {
     String name = entry.getName();
     if (!name.endsWith(".class")) continue;
     name = name.substring(0, name.length() - 6);
     name = name.replace('/', '.');
     names.add(name);
   }
   return names;
 }
Example #9
0
 byte[] getJar(String address) {
   byte[] data;
   boolean gte133 = version().compareTo("1.33u") >= 0;
   try {
     URL url = new URL(address);
     URLConnection uc = url.openConnection();
     int len = uc.getContentLength();
     String name = address.endsWith("ij/ij.jar") ? "daily build" : "ij.jar";
     IJ.showStatus("Downloading ij.jar (" + IJ.d2s((double) len / 1048576, 1) + "MB)");
     InputStream in = uc.getInputStream();
     data = new byte[len];
     int n = 0;
     while (n < len) {
       int count = in.read(data, n, len - n);
       if (count < 0) throw new EOFException();
       n += count;
       if (gte133) IJ.showProgress(n, len);
     }
     in.close();
   } catch (IOException e) {
     return null;
   }
   return data;
 }
Example #10
0
 public void run(String arg) {
   if (arg.equals("menus")) {
     updateMenus();
     return;
   }
   if (IJ.getApplet() != null) return;
   URL url = getClass().getResource("/ij/IJ.class");
   String ij_jar = url == null ? null : url.toString().replaceAll("%20", " ");
   if (ij_jar == null || !ij_jar.startsWith("jar:file:")) {
     error("Could not determine location of ij.jar");
     return;
   }
   int exclamation = ij_jar.indexOf('!');
   ij_jar = ij_jar.substring(9, exclamation);
   if (IJ.debugMode) IJ.log("Updater (jar loc): " + ij_jar);
   File file = new File(ij_jar);
   if (!file.exists()) {
     error("File not found: " + file.getPath());
     return;
   }
   if (!file.canWrite()) {
     String msg = "No write access: " + file.getPath();
     error(msg);
     return;
   }
   String[] list = openUrlAsList(IJ.URL + "/download/jars/list.txt");
   int count = list.length + 3;
   String[] versions = new String[count];
   String[] urls = new String[count];
   String uv = getUpgradeVersion();
   if (uv == null) return;
   versions[0] = "v" + uv;
   urls[0] = IJ.URL + "/upgrade/ij.jar";
   if (versions[0] == null) return;
   for (int i = 1; i < count - 2; i++) {
     String version = list[i - 1];
     versions[i] = version.substring(0, version.length() - 1); // remove letter
     urls[i] =
         IJ.URL + "/download/jars/ij" + version.substring(1, 2) + version.substring(3, 6) + ".jar";
   }
   versions[count - 2] = "daily build";
   urls[count - 2] = IJ.URL + "/ij.jar";
   versions[count - 1] = "previous";
   urls[count - 1] = IJ.URL + "/upgrade/ij2.jar";
   int choice = showDialog(versions);
   if (choice == -1 || !Commands.closeAll()) return;
   // System.out.println("choice: "+choice);
   // for (int i=0; i<urls.length; i++) System.out.println("  "+i+" "+urls[i]);
   byte[] jar = null;
   if ("daily build".equals(versions[choice]) && notes != null && notes.contains(" </title>"))
     jar = getJar("http://wsr.imagej.net/download/daily-build/ij.jar");
   if (jar == null) jar = getJar(urls[choice]);
   if (jar == null) {
     error("Unable to download ij.jar from " + urls[choice]);
     return;
   }
   Prefs.savePreferences();
   // System.out.println("saveJar: "+file);
   saveJar(file, jar);
   if (choice < count - 2) // force macro Function Finder to download fresh list
   new File(IJ.getDirectory("macros") + "functions.html").delete();
   System.exit(0);
 }
Example #11
0
 public void run(String arg) {
   if (arg.equals("menus")) {
     updateMenus();
     return;
   }
   if (IJ.getApplet() != null) return;
   // File file = new File(Prefs.getHomeDir() + File.separator + "ij.jar");
   // if (isMac() && !file.exists())
   //	file = new File(Prefs.getHomeDir() + File.separator +
   // "ImageJ.app/Contents/Resources/Java/ij.jar");
   URL url = getClass().getResource("/ij/IJ.class");
   String ij_jar = url == null ? null : url.toString().replaceAll("%20", " ");
   if (ij_jar == null || !ij_jar.startsWith("jar:file:")) {
     error("Could not determine location of ij.jar");
     return;
   }
   int exclamation = ij_jar.indexOf('!');
   ij_jar = ij_jar.substring(9, exclamation);
   if (IJ.debugMode) IJ.log("Updater: " + ij_jar);
   File file = new File(ij_jar);
   if (!file.exists()) {
     error("File not found: " + file.getPath());
     return;
   }
   if (!file.canWrite()) {
     String msg = "No write access: " + file.getPath();
     if (IJ.isVista()) msg += Prefs.vistaHint;
     error(msg);
     return;
   }
   String[] list = openUrlAsList(IJ.URL + "/download/jars/list.txt");
   int count = list.length + 2;
   String[] versions = new String[count];
   String[] urls = new String[count];
   String uv = getUpgradeVersion();
   if (uv == null) return;
   versions[0] = "v" + uv;
   urls[0] = IJ.URL + "/upgrade/ij.jar";
   if (versions[0] == null) return;
   for (int i = 1; i < count - 1; i++) {
     String version = list[i - 1];
     versions[i] = version.substring(0, version.length() - 1); // remove letter
     urls[i] =
         IJ.URL + "/download/jars/ij" + version.substring(1, 2) + version.substring(3, 6) + ".jar";
   }
   versions[count - 1] = "daily build";
   urls[count - 1] = IJ.URL + "/ij.jar";
   int choice = showDialog(versions);
   if (choice == -1) return;
   if (!versions[choice].startsWith("daily")
       && versions[choice].compareTo("v1.39") < 0
       && Menus.getCommands().get("ImageJ Updater") == null) {
     String msg =
         "This command is not available in versions of ImageJ prior\n"
             + "to 1.39 so you will need to install the plugin version at\n"
             + "<"
             + IJ.URL
             + "/plugins/imagej-updater.html>.";
     if (!IJ.showMessageWithCancel("Update ImageJ", msg)) return;
   }
   byte[] jar = getJar(urls[choice]);
   // file.renameTo(new File(file.getParent()+File.separator+"ij.bak"));
   if (version().compareTo("1.37v") >= 0) Prefs.savePreferences();
   // if (!renameJar(file)) return; // doesn't work on Vista
   saveJar(file, jar);
   if (choice < count - 1) // force macro Function Finder to download fresh list
   new File(IJ.getDirectory("macros") + "functions.html").delete();
   System.exit(0);
 }
  public String what(String key, boolean oneliner) throws Exception {
    byte[] sha;

    Matcher m = SHA_P.matcher(key);
    if (m.matches()) {
      sha = Hex.toByteArray(key);
    } else {
      m = URL_P.matcher(key);
      if (m.matches()) {
        URL url = new URL(key);
        sha = SHA1.digest(url.openStream()).digest();
      } else {
        File jarfile = new File(key);
        if (!jarfile.exists()) {
          reporter.error("File does not exist: %s", jarfile.getCanonicalPath());
        }
        sha = SHA1.digest(jarfile).digest();
      }
    }
    reporter.trace("sha %s", Hex.toHexString(sha));
    Revision revision = library.getRevision(sha);
    if (revision == null) {
      return null;
    }

    StringBuilder sb = new StringBuilder();
    Formatter f = new Formatter(sb);
    Justif justif = new Justif(120, 20, 70, 20, 75);
    DateFormat dateFormat = DateFormat.getDateInstance();

    try {
      if (oneliner) {
        f.format("%20s %s%n", Hex.toHexString(revision._id), createCoord(revision));
      } else {
        f.format("Artifact: %s%n", revision.artifactId);
        if (revision.organization != null && revision.organization.name != null) {
          f.format(" (%s)", revision.organization.name);
        }
        f.format("%n");
        f.format("Coordinates\t0: %s%n", createCoord(revision));
        f.format("Created\t0: %s%n", dateFormat.format(new Date(revision.created)));
        f.format("Size\t0: %d%n", revision.size);
        f.format("Sha\t0: %s%n", Hex.toHexString(revision._id));
        f.format("URL\t0: %s%n", createJpmLink(revision));
        f.format("%n");
        f.format("%s%n", revision.description);
        f.format("%n");
        f.format("Dependencies\t0:%n");
        boolean flag = false;
        Iterable<RevisionRef> closure = library.getClosure(revision._id, true);
        for (RevisionRef dep : closure) {
          f.format(
              " - %s \t2- %s \t3- %s%n",
              dep.name, createCoord(dep), dateFormat.format(new Date(dep.created)));
          flag = true;
        }
        if (!flag) {
          f.format("     None%n");
        }
        f.format("%n");
      }
      f.flush();
      justif.wrap(sb);
      return sb.toString();
    } finally {
      f.close();
    }
  }
Example #13
0
  public static Image getImage(JopSession session, String image) {
    String fullName;
    if (session.getRoot() instanceof JopApplet) {
      String name;
      try {
        URL current = ((JApplet) session.getRoot()).getCodeBase();
        String current_str = current.toString();
        int idx1 = current_str.lastIndexOf('/');
        int idx2 = current_str.lastIndexOf(':');
        int idx = idx1;
        if (idx2 > idx) idx = idx2;
        String path = current_str.substring(0, idx + 1);
        String url_str;

        //        String url_str = new String( path + name);
        if (image.substring(0, 5).compareTo("jpwr/") == 0) {
          idx = image.lastIndexOf('/');
          name = image.substring(5, idx);

          url_str = new String("jar:" + path + "pwr_" + name + ".jar!/" + image);
        } else {
          idx = image.lastIndexOf('/');
          if (idx == -1) name = new String(image);
          else name = image.substring(idx + 1);

          url_str = new String("jar:" + path + "pwrp_" + systemName + "_web.jar!/" + name);
        }
        System.out.println("Opening URL: " + url_str);
        URL url = new URL(url_str);
        return Toolkit.getDefaultToolkit().getImage(url);
      } catch (MalformedURLException e) {
      }
      return null;
    } else {
      // Add default directory /pwrp/img
      System.out.println("Image: " + image);

      //      int idx = image.lastIndexOf('/');
      //      if ( idx == -1)
      //  fullName = new String("/pwrp/img/" + image);
      // else
      fullName = new String(image);
      //      return Toolkit.getDefaultToolkit().getImage( fullName);

      try {
        String name;
        String url_str;
        int idx;
        String path = new String("file://");
        if (image.substring(0, 5).compareTo("jpwr/") == 0) {
          idx = image.lastIndexOf('/');
          name = image.substring(5, idx);

          url_str = new String("$pwr_lib/pwr_" + name + ".jar");
          url_str = Gdh.translateFilename(url_str);
          url_str = new String("jar:" + path + url_str + "!/" + image);
        } else {
          idx = image.lastIndexOf('/');
          if (idx == -1) name = new String(image);
          else name = image.substring(idx + 1);

          url_str = new String("$pwrp_lib/pwrp_" + systemName + ".jar");
          System.out.println("java: " + url_str);
          url_str = Gdh.translateFilename(url_str);
          url_str = new String("jar:" + path + url_str + "!/" + name);
        }
        System.out.println("Opening URL: " + url_str);
        URL url = new URL(url_str);
        return Toolkit.getDefaultToolkit().getImage(url);
      } catch (MalformedURLException e) {
      }
    }
    return null;
  }
 private static Set<String> findStandardMBeansFromDir(URL codeBase) throws Exception {
   File dir = new File(new URI(codeBase.toString()));
   Set<String> names = new TreeSet<String>();
   scanDir(dir, "", names);
   return names;
 }
Example #15
0
  /** Submits POST command to the server, and reads the reply. */
  public boolean post(
      String url,
      String fileName,
      String cryptToken,
      String type,
      String path,
      String content,
      String comment)
      throws IOException {

    String sep = "89692781418184";
    while (content.indexOf(sep) != -1) sep += "x";

    String message = makeMimeForm(fileName, cryptToken, type, path, content, comment, sep);

    // for test
    // URL server = new URL("http", "localhost", 80, savePath);
    URL server =
        new URL(getCodeBase().getProtocol(), getCodeBase().getHost(), getCodeBase().getPort(), url);
    URLConnection connection = server.openConnection();

    connection.setAllowUserInteraction(false);
    connection.setDoOutput(true);
    // connection.setDoInput(true);
    connection.setUseCaches(false);

    connection.setRequestProperty("Content-type", "multipart/form-data; boundary=" + sep);
    connection.setRequestProperty("Content-length", Integer.toString(message.length()));

    // System.out.println(url);
    String replyString = null;
    try {
      DataOutputStream out = new DataOutputStream(connection.getOutputStream());
      out.writeBytes(message);
      out.close();
      // System.out.println("Wrote " + message.length() +
      //		   " bytes to\n" + connection);

      try {
        BufferedReader in = new BufferedReader(new InputStreamReader(connection.getInputStream()));
        String reply = null;
        while ((reply = in.readLine()) != null) {
          if (reply.startsWith("ERROR ")) {
            replyString = reply.substring("ERROR ".length());
          }
        }
        in.close();
      } catch (IOException ioe) {
        replyString = ioe.toString();
      }
    } catch (UnknownServiceException use) {
      replyString = use.getMessage();
      System.out.println(message);
    }
    if (replyString != null) {
      // System.out.println("---- Reply " + replyString);
      if (replyString.startsWith("URL ")) {
        URL eurl = getURL(replyString.substring("URL ".length()));
        getAppletContext().showDocument(eurl);
      } else if (replyString.startsWith("java.io.FileNotFoundException")) {
        // debug; when run from appletviewer, the http connection
        // is not available so write the file content
        if (path.endsWith(".draw") || path.endsWith(".map")) System.out.println(content);
      } else showStatus(replyString);
      return false;
    } else {
      showStatus(url + " saved");
      return true;
    }
  }