@Override
public void actionPerformed(ActionEvent e) {
MainWindow w = MainWindowSingleton.getInstance();
String event = e.getActionCommand();
if ("colour".equals(event)) {
// TODO fail due to old substance API / Bug in API
Color newColor = JColorChooser.showDialog(w, "Choose Element Colour", getElementColor());
JButton b = ((JButton) e.getSource());
b.setBackground(newColor);
ab.setColor(newColor);
ab.setReference(false);
ab.setHidden(false);
ab.setVisible(true);
// reference.setSelected(false);
// updateReferences(false);
} else if ("reference".equals(event)) {
// TODO calculate References properly
ab.setReference(reference.isSelected());
if (reference.isSelected()) {
ab.setHidden(true);
updateReferences(true);
} else {
ab.setHidden(false);
updateReferences(false);
}
colorButton.setBackground(ab.getColor());
} else if ("pathwayLink".equals(event)) {
if (JOptionPane.showConfirmDialog(
w,
"If you delete the PathwayLink the Sub-Pathway (with all eventually made changes within it) will be lost. Do you want to do this?",
"Delete the Sub-Pathway...",
JOptionPane.YES_NO_OPTION,
JOptionPane.QUESTION_MESSAGE)
== JOptionPane.YES_OPTION
&& ab instanceof PathwayMap) {
((PathwayMap) ab).setPathwayLink(null);
w.updateElementTree();
w.updatePathwayTree();
ab.setColor(Color.white);
}
w.updateElementProperties();
} else if (("hideNeighbours".equals(event) || ("showNeighbours".equals(event)))
&& ab instanceof BiologicalNodeAbstract) {
// TODO visible wird noch nicht gehandelt in transformators
Pathway pw = graphInstance.getPathway();
boolean hide = "hideNeighbours".equals(event);
BiologicalNodeAbstract bna = (BiologicalNodeAbstract) ab;
Iterator<BiologicalEdgeAbstract> it =
pw.getGraph().getJungGraph().getIncidentEdges(bna).iterator();
BiologicalEdgeAbstract bea;
while (it.hasNext()) {
// System.out.println(!hide);
bea = it.next();
bea.setVisible(!hide);
// bea.setLabel(!hide+"");
}
Iterator<BiologicalNodeAbstract> it2 =
pw.getGraph().getJungGraph().getNeighbors(bna).iterator();
BiologicalNodeAbstract node;
while (it2.hasNext()) {
// System.out.println("drin");
node = it2.next();
node.setVisible(!hide);
node.setHidden(hide);
}
} else if ("dirChanger".equals(event) && ab.isEdge()) {
Pathway pw = graphInstance.getPathway();
PNEdge edge = (PNEdge) ab;
PNEdge newEdge =
new PNEdge(
edge.getTo(),
edge.getFrom(),
edge.getLabel(),
edge.getName(),
edge.getBiologicalElement(),
edge.getFunction());
newEdge.setUpperBoundary(edge.getUpperBoundary());
newEdge.setLowerBoundary(edge.getLowerBoundary());
newEdge.setActivationProbability(edge.getActivationProbability());
newEdge.setDirected(true);
// pw = graphInstance.getPathway();
MyGraph g = pw.getGraph();
g.getJungGraph().removeEdge(edge);
// g.getEdgeStringer().removeEdge(edge.getEdge());
pw.removeElement(edge);
pw.addEdge(newEdge);
// g.getVisualizationViewer().getPickedState().clearPickedEdges();
graphInstance.setSelectedObject(newEdge);
ab = newEdge;
} else if ("chooseRef".equals(event)) {
BiologicalNodeAbstract bna = (BiologicalNodeAbstract) original;
ReferenceDialog dialog = new ReferenceDialog(bna);
BiologicalNodeAbstract node = dialog.getAnswer();
if (node != null) {
bna.setRef(node);
this.revalidateView();
w.updateElementTree();
// System.out.println("node: "+node.getID());
}
} else if ("deleteRef".equals(event)) {
BiologicalNodeAbstract bna = (BiologicalNodeAbstract) original;
bna.deleteRef();
this.revalidateView();
w.updateElementTree();
} else if ("pickOrigin".equals(event)) {
BiologicalNodeAbstract bna = (BiologicalNodeAbstract) original;
Pathway pw = graphInstance.getPathway();
pw = graphInstance.getPathway();
MyGraph g = pw.getGraph();
g.getVisualizationViewer().getPickedVertexState().pick(bna.getRef(), true);
this.revalidateView();
} else if ("pickRefs".equals(event)) {
BiologicalNodeAbstract bna = (BiologicalNodeAbstract) original;
Pathway pw = graphInstance.getPathway();
pw = graphInstance.getPathway();
MyGraph g = pw.getGraph();
// System.out.println("c: "+g.getJungGraph().getVertexCount());
BiologicalNodeAbstract pick;
Iterator<BiologicalNodeAbstract> it = bna.getRefs().iterator();
// System.out.println("size: "+bna.getRefs().size());
while (it.hasNext()) {
pick = it.next();
// System.out.println(pick.getLabel());
// System.out.println(pick);
g.getVisualizationViewer().getPickedVertexState().pick(pick, true);
}
// System.out.println(g.getVisualizationViewer().getPickedVertexState().getPicked().size());
this.revalidateView();
} else if ("showParameters".equals(event)) {
// System.out.println("show parameters");
new ParameterWindow(ab);
this.updateWindow(ab);
p.revalidate();
} else if ("showLabels".equals(event)) {
// System.out.println("click");
new LabelsWindow(ab);
} else if ("knockedOut".equals(event)) {
((Transition) ab).setKnockedOut(knockedOut.isSelected());
this.updateWindow(ab);
p.revalidate();
// p.repaint();
Pathway pw = new GraphInstance().getPathway();
pw.handleChangeFlags(ChangedFlags.PNPROPERTIES_CHANGED);
// System.out.println("knocked out");
} else if ("constCheck".equals(event)) {
if (ab instanceof BiologicalNodeAbstract) {
BiologicalNodeAbstract bna = (BiologicalNodeAbstract) ab;
if (constCheck.isSelected()) {
this.tokenMin.setEnabled(false);
this.tokenMax.setEnabled(false);
bna.setConstant(true);
} else {
this.tokenMin.setEnabled(true);
this.tokenMax.setEnabled(true);
bna.setConstant(false);
}
Pathway pw = new GraphInstance().getPathway();
pw.handleChangeFlags(ChangedFlags.EDGEWEIGHT_CHANGED);
}
// System.out.println(this.constCheck.isSelected());
}
GraphInstance.getMyGraph().updateGraph();
}
