private void addComponents() {
// Loop over all components and add them to this form
for (Component c : mooseModel.getForm().getComponents()) {
if (c.getName().equals("Mesh")) {
c.setName("Mesh and Output Files");
}
form.addComponent(c);
}
// Grab an explicit reference to the files component from the Model
modelFiles = (DataComponent) form.getComponent(1);
// Register this Item as a listener to the MOOSE-Based Application
// Entry so that if it changes to Remote, we can grab the
// IRemoteConnection
modelFiles.retrieveEntry("MOOSE-Based Application").register(this);
// Add the parallel execution component
form.addComponent(mooseLauncher.getForm().getComponent(3));
// Get a handle to the model input tree
modelTree = (TreeComposite) form.getComponent(2);
fileEntryTreeMapping = new HashMap<String, TreeComposite>();
// Initialize the postProcessor Mapping
postProcessorResources = new HashMap<String, ICEResource>();
// Create the Postprocessors DataComponent
postProcessorsData = new DataComponent();
postProcessorsData.setName("Show Postprocessors?");
postProcessorsData.setDescription(
"Enable the Postprocessors you would like to monitor in real time.");
postProcessorsData.setId(MOOSE.ppDataId);
form.addComponent(postProcessorsData);
TreeComposite ppTree;
if ((ppTree = getTreeByName("Postprocessors")) != null) {
setupPostprocessorData(ppTree);
}
}
/**
* (non-Javadoc)
*
* @see org.eclipse.ice.item.Item#loadInput(java.lang.String)
*/
@Override
public void loadInput(String input) {
mooseModel.loadInput(input);
form = new Form();
String description =
"The Multiphysics Object-Oriented Simulation "
+ "Environment (MOOSE) is a multiphysics framework developed "
+ "by Idaho National Laboratory.";
// Set the model defaults
form.setName("MOOSE Workflow");
form.setDescription(description);
form.setItemID(getId());
form.setActionList(allowedActions);
// Loop over all components and add them to this form
for (Component c : mooseModel.getForm().getComponents()) {
form.addComponent(c);
}
// Add the model files component
modelFiles = (DataComponent) form.getComponent(1);
// Loop over all components and add the parallel exec and output
// components only
for (Component c : mooseLauncher.getForm().getComponents()) {
if ("Parallel Execution".equals(c.getName()) || "Output Files and Data".equals(c.getName())) {
form.addComponent(c);
}
}
// Set up the postProcessorData DataComponent to contain
// a list of Boolean Discrete Entries for each Postprocessor
postProcessorsData = new DataComponent();
postProcessorsData.setName("Show Postprocessors?");
postProcessorsData.setDescription(
"Enable the Postprocessors you would like to monitor in real time.");
postProcessorsData.setId(MOOSE.ppDataId);
form.addComponent(postProcessorsData);
TreeComposite ppTree;
if ((ppTree = getTreeByName("Postprocessors")) != null) {
setupPostprocessorData(ppTree);
}
// Get a handle to the model input tree
modelTree = (TreeComposite) form.getComponent(2);
loadFileEntries();
// Register this Item as a listener to the Variables block
// this is so we can use the variables to populate things like
// kernel variable entries.
TreeComposite vars = getTreeByName("Variables");
if (vars != null) {
vars.register(this);
}
TreeComposite aux = getTreeByName("AuxVariables");
if (aux != null) {
aux.register(this);
}
modelTree.register(this);
registered = true;
return;
}
/**
* (non-Javadoc)
*
* @see org.eclipse.ice.item.Item#process(java.lang.String)
*/
@Override
public FormStatus process(String actionName) {
// Local Declarations
FormStatus retStatus = FormStatus.InfoError;
// Set our outputFile as the MooseLauncher's output file
// so we can see the streaming output
outputFile = mooseLauncher.getOutputFile();
// Parse the action name
if ("Launch the Job".equals(actionName)) {
// FIXME WE NEED TO DO A CHECK FOR ALL THE REQUIRED BLOCKS!!!!
// Add the ICEUpdater tree block to Outputs
TreeComposite outputs = getTreeByName("Outputs");
TreeComposite postProcessors = getTreeByName("Postprocessors");
// First check to see if we have any post processors to
// watch for.
if (postProcessors.isActive() && postProcessors.getNumberOfChildren() > 0) {
// If we do, we should add an ICEUpdater
boolean iNeedUpdater = true;
// If we already have one, then we shouldn't add another one
for (int i = 0; i < outputs.getNumberOfChildren(); i++) {
if ("ICEUpdater".equals(outputs.getChildAtIndex(i).getName())) {
// But if the current one is not configured correctly
// then we should add a new one, Here we make sure the
// Item Id is correct...
TreeComposite iceUpdater = outputs.getChildAtIndex(i);
DataComponent data = (DataComponent) iceUpdater.getDataNodes().get(0);
Entry itemIdEntry = data.retrieveEntry("item_id");
if (Integer.valueOf(itemIdEntry.getValue()) != getId()) {
itemIdEntry.setValue(String.valueOf(getId()));
}
// Now we have a valid ICEUpdater, so we don't need
// to create a new one.
iNeedUpdater = false;
break;
}
}
if (iNeedUpdater) {
for (int i = 0; i < outputs.getChildExemplars().size(); i++) {
if ("ICEUpdater".equals(outputs.getChildExemplars().get(i).getName())) {
TreeComposite updater = (TreeComposite) outputs.getChildExemplars().get(i).clone();
outputs.setNextChild(updater);
DataComponent data = (DataComponent) updater.getDataNodes().get(0);
data.retrieveEntry("item_id").setValue(String.valueOf(getId()));
data.retrieveEntry("url")
.setValue(
"http://localhost:"
+ System.getProperty("org.eclipse.equinox.http.jetty.http.port")
+ "/ice/update");
updater.setActive(true);
updater.setActiveDataNode(data);
break;
}
}
}
}
// Get a reference to the Launchers files component
DataComponent launcherFiles = (DataComponent) mooseLauncher.getForm().getComponent(1);
// Grab the file name the user has specified for the input file
String fileName = modelFiles.retrieveEntry("Output File Name").getValue();
// Write the Moose file if it doesn't exist
retStatus = mooseModel.process("Write MOOSE File");
if (!retStatus.equals(FormStatus.Processed)) {
return retStatus;
}
// Set the value of the input file to the user-specified
// file name
launcherFiles.retrieveEntry("Input File").setValue(fileName);
// Update the MooseLauncher's set of input files...
mooseLauncher.update(launcherFiles.retrieveEntry("Input File"));
for (Entry e : modelFiles.retrieveAllEntries()) {
Entry launcherFile = launcherFiles.retrieveEntry(e.getName());
if (launcherFile != null) {
launcherFile.setValue(e.getValue());
}
}
// Get the application URI
URI appUri = URI.create(modelFiles.retrieveEntry("MOOSE-Based Application").getValue());
// Check if we're local or remote
if ("ssh".equals(appUri.getScheme())) {
mooseLauncher.setExecutable(
Paths.get(appUri.getRawPath()).getFileName().toString(),
"",
appUri.getRawPath() + " -i ${inputFile} --no-color");
// Setup the hosts table to use the remote host
TableComponent hostsTable =
(TableComponent) mooseLauncher.getForm().getComponent(JobLauncherForm.parallelId + 1);
IRemoteConnection remoteConnection = mooseLauncher.getRemoteConnection(appUri.getHost());
String hostname =
remoteConnection.getService(IRemoteConnectionHostService.class).getHostname();
int index = hostsTable.addRow();
ArrayList<Entry> row = hostsTable.getRow(index);
ArrayList<Integer> selected = new ArrayList<Integer>();
selected.add(new Integer(index));
row.get(0).setValue(hostname);
hostsTable.setSelectedRows(selected);
} else {
// Set the executable string
mooseLauncher.setExecutable(
new File(appUri).getName(), "", appUri.getPath() + " -i ${inputFile} --no-color");
}
// Register as a listener of the resource component
// so we can add the resources to our resource component
((ResourceComponent) mooseLauncher.getForm().getComponent(JobLauncherForm.outputId))
.register(this);
// Launch the Moose application
retStatus = mooseLauncher.process(actionName);
} else if ("Write MOOSE File".equals(actionName)) {
// Simply pass this along to the Model
retStatus = mooseModel.process(actionName);
}
// Set the status flag.
status = retStatus;
// Keep the status in sync
if (status.equals(FormStatus.Processing)) {
Thread statusThread =
new Thread(
new Runnable() {
@Override
public void run() {
while (!status.equals(FormStatus.Processed)) {
// Sleep for a bit
Thread.currentThread();
try {
Thread.sleep(100);
} catch (InterruptedException e) {
logger.error(getClass().getName() + " Exception!", e);
}
// Set the status
status = mooseLauncher.getStatus();
}
return;
}
});
statusThread.start();
}
return retStatus;
}