public void updateOvlpForIPOGs() {
int i, len = IPOGNode.IPOGs.size();
for (i = 0; i < len; i++) {
IPOGNode.IPOGs.get(i).setOverlappingInfo(preOvlp, preRid, postOvlp, postRid);
if (cContourShape == null) IPOGNode.setArea(getRegionArea());
}
}
public void updateGaussianNodeGroup(
ArrayList<IPOGaussianNode> IPOGGs,
int r,
int[][] pixels0,
int w,
int h,
int index,
int trackingLength) {
IPOGNode = new IPOGaussianNodeComplex(IPOGGs);
int i, j, ix;
ix = 0;
IPOGaussianNode IPOG;
pixels = pixels0;
cx = IPOGNode.xcr;
cy = IPOGNode.ycr;
cz = IPOGNode.getZ();
this.w = w;
this.h = h;
this.t = t;
radius = r;
int xi = cx - r, xf = cx + r, yi = cy - r, yf = cy + r;
if (xi < 0) xi = 0;
if (yi < 0) yi = 0;
if (xf > w - 1) xf = w - 1;
if (yf > h - 1) yf = h - 1;
ave = 0.;
size = 0;
for (i = yi; i <= yf; i++) {
for (j = xi; j <= xf; j++) {
size++;
ave += pixels[i][j];
}
}
ave /= size;
background = false;
// this.index=index;
pixelHeight = 0;
pixelHeight = IPOGNode.dTotalSignal; // old definition of pixelHeigth.
this.trackingLength = trackingLength;
preIPO = null;
postIPO = null;
preIPOs = null;
postIPOs = null;
IPOsWithinContour = new ArrayList<IntensityPeakObject>();
}
public void setPeak3(double pixel) {
peak3 = pixel;
IPOGNode.setPeak3(pixel);
}
public void setPeak1(double pixel) {
peak1 = pixel;
IPOGNode.setPeak1(pixel);
}
public void setBackground(double bkg) {
IPOGNode.setBackground(bkg);
}
public void setTotalSignal(double signal) {
dTotalSignal = signal;
IPOGNode.setTotalSignal(signal);
}
public void setBundleTotalSignal(double signal) {
dTotalBundleSignal = signal;
IPOGNode.setBundleTotalSignal(signal);
}
public void setArea(int area) {
this.area = area;
IPOGNode.setArea(area);
}
