@SuppressWarnings("deprecation")
private Form getRemoveForm(final String admin) {
removeExperimentForm = new Form();
removeExperimentForm.setCaption("Remove Existing Experiment");
removeExperimentForm.setWidth("50%");
expList = eh.getExperiments(null);
List<String> strExpList = new ArrayList<String>();
for (ExperimentBean exp : expList.values()) {
if (user.getEmail().equalsIgnoreCase("*****@*****.**")
|| exp.getEmail().equalsIgnoreCase(user.getEmail())) {
String str = exp.getExpId() + " " + exp.getName() + " ( " + exp.getUploadedByName() + " )";
strExpList.add(str);
}
}
final Select selectExp = new Select("Experiment ID", strExpList);
selectExp.setWidth("100%");
removeExperimentForm.addField(Integer.valueOf(1), selectExp);
Button removeExpButton = new Button("Remove Experiment");
removeExpButton.setStyle(Reindeer.BUTTON_SMALL);
removeExperimentForm.addField(Integer.valueOf(2), removeExpButton);
removeExpButton.addListener(
new ClickListener() {
/** */
private static final long serialVersionUID = 1L;
@Override
public void buttonClick(ClickEvent event) {
String str = selectExp.getValue().toString();
String[] strArr = str.split("\t");
Integer expId = (Integer.valueOf(strArr[0]));
if (expId != null) {
boolean test = auth.removeExp(expId);
if (test) {
updateComponents(user);
} else {
getWindow().showNotification("Failed to Remove The Experiment! ");
}
} else {
}
}
});
return removeExperimentForm;
}
/**
* Fills the form with current field component. Adds additional widgets if needed (i.e. "select
* all" box)
*
* @param form The form to place the field in
* @param layout The layout that displays the field
*/
public void placeYourselfInForm(Form form, FormLayout layout) {
if (fieldComponent == null) {
return;
}
if (fieldComponent instanceof Field) {
form.addField(name, (Field) fieldComponent);
} else if (fieldComponent instanceof FilterContainer) {
for (Select select : ((FilterContainer) fieldComponent).getLevels()) {
form.addField(select.getCaption(), select);
}
} else {
layout.addComponent(fieldComponent);
}
if (selectAll) {
final CheckBox saCheckbox = UiFactory.createCheckBox(UiIds.AR_MSG_SELECT_ALL, null);
saCheckbox.addListener(
new Property.ValueChangeListener() {
@Override
public void valueChange(ValueChangeEvent event) {
boolean selected = (Boolean) saCheckbox.getValue();
if (fieldComponent instanceof Select) {
for (Object itemId : ((Select) fieldComponent).getItemIds()) {
if (selected) {
((Select) fieldComponent).select(itemId);
} else {
((Select) fieldComponent).unselect(itemId);
}
}
}
if (fieldComponent instanceof FilterContainer) {
List<Select> selectList = ((FilterContainer) fieldComponent).getLevels();
Select select = selectList.get(selectList.size() - 1);
for (Object itemId : select.getItemIds()) {
if (selected) {
select.select(itemId);
} else {
select.unselect(itemId);
}
}
}
}
});
form.addField(name + "_all", saCheckbox);
}
}
@Override
public void init() {
Window mainWindow = new Window("Test Application");
Form form = new Form();
form.setCaption("Form Caption");
form.setDescription(
"This is a description of the Form that is "
+ "displayed in the upper part of the form. You normally "
+ "enter some descriptive text about the form and its "
+ "use here.");
// Add a field and bind it to an named item property.
form.addField("nom", new TextField("Nom"));
form.addField("prenom", new TextField("Prenom"));
form.addField("age", new TextField("Age"));
// Set the footer layout.
form.setFooter(new VerticalLayout());
form.getFooter()
.addComponent(
new Label(
"This is the footer area of the Form. "
+ "You can use any layout here. "
+ "This is nice for buttons."));
// Have a button bar in the footer.
HorizontalLayout okbar = new HorizontalLayout();
okbar.setHeight("25px");
form.getFooter().addComponent(okbar);
Button okbutton = new Button("OK", form, "commit");
okbutton.addListener(new OkListener(form));
okbar.addComponent(okbutton);
okbar.setComponentAlignment(okbutton, Alignment.TOP_RIGHT);
Button resetbutton = new Button("Reset", form, "discard");
resetbutton.addListener(new ResetListener(form));
okbar.addComponent(resetbutton);
mainWindow.addComponent(form);
setMainWindow(mainWindow);
}
@SuppressWarnings({"deprecation", "serial"})
private void updateComponents(final User user) {
if (container != null) {
container.removeAllComponents();
}
container = new Panel();
root = new Panel();
root.setStyle(Reindeer.PANEL_LIGHT);
container.setHeight("100%");
container.setStyle(Reindeer.PANEL_LIGHT);
setCompositionRoot(container);
// Create the Form
newExpForm = new Form();
newExpForm.setCaption("New Experiment");
newExpForm.setWriteThrough(false); // we want explicit 'apply'
newExpForm.setInvalidCommitted(false); // no invalid values in data model
// Determines which properties are shown, and in which order:
expNameField = new TextField("Experiment Name:");
expNameField.setStyle(Reindeer.TEXTFIELD_SMALL);
expNameField.setRequired(true);
expNameField.setRequiredError("EXPERIMENT NAME CAN NOT BE EMPTY!");
expNameField.setWidth("350px");
expNameField.setMaxLength(70);
speciesField = new TextField("Species:");
speciesField.setStyle(Reindeer.TEXTFIELD_SMALL);
speciesField.setRequired(true);
speciesField.setRequiredError("EXPERIMENT SPECIES CAN NOT BE EMPTY!");
speciesField.setWidth("350px");
speciesField.setMaxLength(70);
sampleTypeField = new TextField("Sample Type:");
sampleTypeField.setStyle(Reindeer.TEXTFIELD_SMALL);
sampleTypeField.setRequired(true);
sampleTypeField.setRequiredError("EXPERIMENT SAMPLE TYPE CAN NOT BE EMPTY!");
sampleTypeField.setWidth("350px");
sampleTypeField.setMaxLength(70);
sampleProcessingField = new TextField("Sample Processing:");
sampleProcessingField.setStyle(Reindeer.TEXTFIELD_SMALL);
sampleProcessingField.setRequired(true);
sampleProcessingField.setRequiredError("EXPERIMENT SAMPLE PROCESSING CAN NOT BE EMPTY!");
sampleProcessingField.setWidth("350px");
sampleProcessingField.setMaxLength(70);
instrumentTypeField = new TextField("Instrument Type:");
instrumentTypeField.setStyle(Reindeer.TEXTFIELD_SMALL);
instrumentTypeField.setRequired(true);
instrumentTypeField.setRequiredError("EXPERIMENT INSTURMENT TYPE CAN NOT BE EMPTY!");
instrumentTypeField.setWidth("350px");
instrumentTypeField.setMaxLength(70);
fragModeField = new TextField("Frag Mode:");
fragModeField.setStyle(Reindeer.TEXTFIELD_SMALL);
fragModeField.setRequired(true);
fragModeField.setRequiredError("EXPERIMENT FRAG MODE CAN NOT BE EMPTY!");
fragModeField.setWidth("350px");
fragModeField.setMaxLength(70);
UploadedByNameField = new TextField("Uploaded By:");
UploadedByNameField.setStyle(Reindeer.TEXTFIELD_SMALL);
UploadedByNameField.setRequired(true);
UploadedByNameField.setRequiredError("EXPERIMENT UPLOADED BY CAN NOT BE EMPTY!");
UploadedByNameField.setValue(user.getUsername());
UploadedByNameField.setEnabled(false);
UploadedByNameField.setWidth("350px");
UploadedByNameField.setMaxLength(70);
emailField = new TextField("Email:");
emailField.setStyle(Reindeer.TEXTFIELD_SMALL);
emailField.setRequired(true);
emailField.setValue(user.getEmail());
emailField.setEnabled(false);
emailField.setRequiredError("EXPERIMENT EMAIL CAN NOT BE EMPTY!");
emailField.setWidth("350px");
emailField.setMaxLength(70);
descriptionField = new TextArea("Description:");
descriptionField.setStyle(Reindeer.TEXTFIELD_SMALL);
descriptionField.setRequired(true);
descriptionField.setRequiredError("EXPERIMENT Description CAN NOT BE EMPTY!");
descriptionField.setWidth("350px");
descriptionField.setMaxLength(950);
publicationLinkField = new TextField("Publication Link:");
publicationLinkField.setStyle(Reindeer.TEXTFIELD_SMALL);
publicationLinkField.setWidth("350px");
publicationLinkField.setMaxLength(300);
newExpForm.addField(Integer.valueOf(1), expNameField);
newExpForm.addField(Integer.valueOf(2), descriptionField);
newExpForm.addField(Integer.valueOf(3), speciesField);
newExpForm.addField(Integer.valueOf(4), sampleTypeField);
newExpForm.addField(Integer.valueOf(5), sampleProcessingField);
newExpForm.addField(Integer.valueOf(6), instrumentTypeField);
newExpForm.addField(Integer.valueOf(7), fragModeField);
newExpForm.addField(Integer.valueOf(8), UploadedByNameField);
newExpForm.addField(Integer.valueOf(9), emailField);
newExpForm.addField(Integer.valueOf(10), publicationLinkField);
// Add form to layout
container.addComponent(newExpForm);
Panel p = new Panel();
Label l =
new Label(
"<h4 style='color:blue'>Or Update Existing Experiments !</h4><h4 style='color:blue'>For New Experiment Please Leave Experiment ID Blank!</h4><h4 style='color:blue'><strong style='color:red'>* </strong> For New Experiment Please Remember to Upload Protein file first!</h4>");
l.setContentMode(Label.CONTENT_XHTML);
p.addComponent(l);
container.addComponent(p);
// Create the Form
Form existExpForm = new Form();
existExpForm.setCaption("Exist Experiments");
expList = eh.getExperiments(null);
List<String> strExpList = new ArrayList<String>();
for (ExperimentBean exp : expList.values()) {
if (user.getEmail().equalsIgnoreCase("*****@*****.**")
|| exp.getEmail().equalsIgnoreCase(user.getEmail())) {
String str = exp.getExpId() + " " + exp.getName() + " ( " + exp.getUploadedByName() + " )";
strExpList.add(str);
}
}
select = new Select("Experiment ID", strExpList);
select.setImmediate(true);
select.addListener(
new Property.ValueChangeListener() {
@Override
public void valueChange(ValueChangeEvent event) {
Object o = select.getValue();
if (o != null) {
String str = select.getValue().toString();
String[] strArr = str.split("\t");
int id = (Integer.valueOf(strArr[0]));
ExperimentBean expDet = expList.get(id);
if (expDetails != null) {
expDetails.removeAllComponents();
if (expDet.getProteinsNumber() == 0) {
Label l = new Label("<h4 style='color:red'>1) Protein File is Missing</h4>");
l.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(l);
} else {
Label l = new Label("<h4 style='color:blue'>1) Protein File is Uploaded</h4>");
l.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(l);
}
if (expDet.getFractionsNumber() == 0) {
Label l = new Label("<h4 style='color:red'>2) Fraction File is Missing</h4>");
l.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(l);
} else {
Label l = new Label("<h4 style='color:blue'>2) Fraction File Uploaded</h4>");
l.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(l);
}
// if (expDet.getFractionRange() == 0) {
// Label l = new Label("<h4 style='color:red'>3) Fraction
// Range File is Missing</h4>");
// l.setContentMode(Label.CONTENT_XHTML);
// expDetails.addComponent(l);
// } else {
// Label l = new Label("<h4 style='color:blue'>3)
// Fraction Range File Uploaded</h4>");
// l.setContentMode(Label.CONTENT_XHTML);
// expDetails.addComponent(l);
// }
if (expDet.getPeptidesNumber() == 0) {
Label l = new Label("<h4 style='color:red'>3) Peptides File is Missing</h4>");
l.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(l);
} else {
Label l = new Label("<h4 style='color:blue'>3) Peptides File Uploaded</h4>");
l.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(l);
}
}
} else {
expDetails.removeAllComponents();
Label labelDetails =
new Label(
"<h4 style='color:red;'>Please Select Experiment To Show the Details.</h4>");
labelDetails.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(labelDetails);
}
}
});
select.setWidth("60%");
existExpForm.addField(Integer.valueOf(1), select);
// Add form to layout
VerticalLayout vlo = new VerticalLayout();
if (hslo != null) {
vlo.removeComponent(hslo);
}
hslo = new HorizontalLayout();
hslo.setSizeFull();
hslo.addComponent(existExpForm);
vlo.addComponent(hslo);
if (removeExperimentLayout != null) {
hslo.removeComponent(removeExperimentLayout);
}
removeExperimentLayout = this.getRemoveForm(user.getEmail());
hslo.addComponent(removeExperimentLayout);
hslo.setComponentAlignment(removeExperimentForm, Alignment.MIDDLE_CENTER);
vlo.addComponent(hslo);
container.addComponent(vlo);
// Create the Upload component.
upload = new Upload(null, this);
upload.setStyleName("small");
upload.setVisible(true);
upload.setHeight("30px");
upload.setButtonCaption("ADD / EDIT EXPERIMENT !");
// *****************************************************
upload.addListener(
new Upload.StartedListener() {
@SuppressWarnings("static-access")
@Override
public void uploadStarted(StartedEvent event) {
try {
Thread.currentThread().sleep(1000);
Thread t =
new Thread(
new Runnable() {
@Override
public void run() {
pi.setVisible(true);
}
});
t.start();
t.join();
} catch (InterruptedException e) {
}
mainTabs.setReadOnly(true);
subTabs.setReadOnly(true);
}
});
upload.addListener(
new Upload.FinishedListener() {
@Override
public void uploadFinished(FinishedEvent event) {
pi.setVisible(false);
mainTabs.setReadOnly(false);
subTabs.setReadOnly(false);
file = new File(event.getFilename());
}
});
// ***********************************
upload.addListener((Upload.SucceededListener) this);
upload.addListener((Upload.FailedListener) this);
if (helpNote != null) {
vlo.removeComponent(helpNote);
}
Label label =
new Label(
"<h4 style='color:red;'>Please upload proteins file first</h4><h4 style='color:red;'>Please upload proteins files in (.txt) format.</h4><h4 style='color:red;'>Upload fraction range file after upload protein fraction file.</h4><h4 style='color:red;'>Upload fraction range file in (.xlsx) format.</h4>");
label.setContentMode(Label.CONTENT_XHTML);
helpNote = help.getHelpNote(label);
helpNote.setMargin(false, true, true, true);
vlo.addComponent(upload);
vlo.addComponent(pi);
vlo.addComponent(helpNote);
vlo.setComponentAlignment(helpNote, Alignment.MIDDLE_RIGHT);
expDetails = new Panel("Experiment Details");
Label labelDetails =
new Label("<h4 style='color:red;'>Please Select Experiment To Show the Details.</h4>");
labelDetails.setContentMode(Label.CONTENT_XHTML);
expDetails.addComponent(labelDetails);
vlo.addComponent(expDetails);
root.addComponent(vlo);
container.addComponent(root);
}
@Override
public void attach() {
super.attach();
init(
getBundleString("streamingConfigPanel.caption"),
getComponentFactory().createGridLayout(1, 5, true, true));
myVlcEnabled = getComponentFactory().createCheckBox("streamingConfigPanel.vlcEnabled");
myVlcBinary =
getComponentFactory()
.createTextField(
"streamingConfigPanel.vlcBinary",
new VlcExecutableFileValidator(
getBundleString("streamingConfigPanel.vlcBinary.invalidBinary")));
myVlcBinary.setImmediate(false);
myVlcBinarySelect =
getComponentFactory().createButton("streamingConfigPanel.vlcBinary.select", this);
myVlcHomepageButton =
getComponentFactory().createButton("streamingConfigPanel.vlcHomepage", this);
myVlcForm = getComponentFactory().createForm(null, true);
myVlcForm.addField(myVlcEnabled, myVlcEnabled);
myVlcForm.addField(myVlcBinary, myVlcBinary);
myVlcForm.addField(myVlcBinarySelect, myVlcBinarySelect);
myVlcForm.addField(myVlcHomepageButton, myVlcHomepageButton);
Panel vlcPanel =
getComponentFactory()
.surroundWithPanel(
myVlcForm,
FORM_PANEL_MARGIN_INFO,
getBundleString("streamingConfigPanel.caption.vlc"));
addComponent(vlcPanel);
Panel transcoderPanel = new Panel(getBundleString("streamingConfigPanel.caption.transcoder"));
transcoderPanel.setContent(getComponentFactory().createVerticalLayout(true, true));
Panel addTranscoderButtons = new Panel();
addTranscoderButtons.addStyleName("light");
addTranscoderButtons.setContent(
getApplication().getComponentFactory().createHorizontalLayout(false, true));
myAddTranscoder =
getComponentFactory().createButton("streamingConfigPanel.transcoder.add", this);
addTranscoderButtons.addComponent(myAddTranscoder);
myTranscoderTable = new Table();
myTranscoderTable.setCacheRate(50);
myTranscoderTable.addContainerProperty(
"name",
String.class,
null,
getBundleString("streamingConfigPanel.transcoder.name"),
null,
null);
myTranscoderTable.addContainerProperty("edit", Button.class, null, "", null, null);
myTranscoderTable.addContainerProperty("delete", Button.class, null, "", null, null);
myTranscoderTable.setSortContainerPropertyId("name");
transcoderPanel.addComponent(myTranscoderTable);
transcoderPanel.addComponent(addTranscoderButtons);
addComponent(transcoderPanel);
myCacheForm = getComponentFactory().createForm(null, true);
myTranscodingCacheMaxGiB =
getComponentFactory()
.createTextField(
"streamingConfigPanel.cache.transcodingCacheMaxGiB",
getApplication().getValidatorFactory().createMinMaxValidator(1, 1024));
myCacheForm.addField("limitTranscoding", myTranscodingCacheMaxGiB);
myHttpLiveStreamCacheMaxGiB =
getComponentFactory()
.createTextField(
"streamingConfigPanel.cache.httpLiveStreamCacheMaxGiB",
getApplication().getValidatorFactory().createMinMaxValidator(1, 1024));
myCacheForm.addField("limitHttpLiveStream", myHttpLiveStreamCacheMaxGiB);
myClearAllCachesButton =
getComponentFactory().createButton("streamingConfigPanel.clearAllCaches", this);
myCacheForm.addField(myClearAllCachesButton, myClearAllCachesButton);
addComponent(
getComponentFactory()
.surroundWithPanel(
myCacheForm,
FORM_PANEL_MARGIN_INFO,
getBundleString("streamingConfigPanel.caption.cache")));
addDefaultComponents(0, 4, 0, 4, false);
initFromConfig();
}
@Override
public void attach() {
super.attach();
init(
getBundleString("miscConfigPanel.caption"),
getComponentFactory().createGridLayout(1, 6, true, true));
myMainWindowForm = getComponentFactory().createForm(null, true);
myMyTunesRssComForm = getComponentFactory().createForm(null, true);
myWebInterfaceForm = getComponentFactory().createForm(null, true);
myProxyForm = getComponentFactory().createForm(null, true);
mySmtpForm = getComponentFactory().createForm(null, true);
myWebLoginMessage = getComponentFactory().createTextField("miscConfigPanel.webLoginMessage");
myWebWelcomeMessage =
getComponentFactory().createTextField("miscConfigPanel.webWelcomeMessage");
myServerBrowserActive =
getComponentFactory().createCheckBox("miscConfigPanel.serverBrowserActive");
myOpenIdActive = getComponentFactory().createCheckBox("miscConfigPanel.openIdActive");
myProxyHost = getComponentFactory().createTextField("miscConfigPanel.proxyHost");
myProxyPort =
getComponentFactory()
.createTextField(
"miscConfigPanel.proxyPort",
getApplication().getValidatorFactory().createPortValidator());
myMailHost = getComponentFactory().createTextField("miscConfigPanel.mailHost");
myMailPort =
getComponentFactory()
.createTextField(
"miscConfigPanel.mailPort",
getApplication().getValidatorFactory().createPortValidator());
mySmtpProtocol =
getComponentFactory()
.createSelect(
"miscConfigPanel.smtpProtocol",
Arrays.asList(SmtpProtocol.PLAINTEXT, SmtpProtocol.STARTTLS, SmtpProtocol.SSL));
myMailLogin = getComponentFactory().createTextField("miscConfigPanel.mailLogin");
myMailPassword = getComponentFactory().createPasswordTextField("miscConfigPanel.mailPassword");
myMailSender =
getComponentFactory()
.createTextField(
"miscConfigPanel.mailSender",
getApplication().getValidatorFactory().createEmailValidator());
myHeadless = getComponentFactory().createCheckBox("miscConfigPanel.headless");
myMainWindowForm.addField(myHeadless, myHeadless);
Panel mainWindowPanel =
getComponentFactory()
.surroundWithPanel(
myMainWindowForm,
FORM_PANEL_MARGIN_INFO,
getBundleString("miscConfigPanel.caption.mainWindow"));
addComponent(mainWindowPanel);
myProxyForm.addField(myProxyHost, myProxyHost);
myProxyForm.addField(myProxyPort, myProxyPort);
Panel proxyPanel =
getComponentFactory()
.surroundWithPanel(
myProxyForm,
FORM_PANEL_MARGIN_INFO,
getBundleString("miscConfigPanel.caption.proxy"));
addComponent(proxyPanel);
mySmtpForm.addField(myMailHost, myMailHost);
mySmtpForm.addField(myMailPort, myMailPort);
mySmtpForm.addField(mySmtpProtocol, mySmtpProtocol);
mySmtpForm.addField(myMailLogin, myMailLogin);
mySmtpForm.addField(myMailPassword, myMailPassword);
mySmtpForm.addField(myMailSender, myMailSender);
Panel smtpPanel =
getComponentFactory()
.surroundWithPanel(
mySmtpForm,
FORM_PANEL_MARGIN_INFO,
getBundleString("miscConfigPanel.caption.smtp"));
addComponent(smtpPanel);
myWebInterfaceForm.addField(myWebLoginMessage, myWebLoginMessage);
myWebInterfaceForm.addField(myWebWelcomeMessage, myWebWelcomeMessage);
myWebInterfaceForm.addField(myServerBrowserActive, myServerBrowserActive);
myWebInterfaceForm.addField(myOpenIdActive, myOpenIdActive);
Panel webInterfacePanel =
getComponentFactory()
.surroundWithPanel(
myWebInterfaceForm,
FORM_PANEL_MARGIN_INFO,
getBundleString("miscConfigPanel.caption.webInterface"));
addComponent(webInterfacePanel);
myGraphicsMagickEnabled =
getComponentFactory().createCheckBox("miscConfigPanel.graphicsMagickEnabled");
myGraphicsMagickBinary =
getComponentFactory()
.createTextField(
"miscConfigPanel.graphicsMagickBinary",
new GraphicsMagickExecutableFileValidator(
getBundleString("miscConfigPanel.graphicsMagickBinary.invalidBinary")));
myGraphicsMagickBinary.setImmediate(false);
myGraphicsMagickBinarySelect =
getComponentFactory().createButton("miscConfigPanel.graphicsMagickBinary.select", this);
myGraphicsMagickHomepageButton =
getComponentFactory().createButton("miscConfigPanel.graphicsMagickHomepage", this);
myGraphicsMagickForm = getComponentFactory().createForm(null, true);
myGraphicsMagickForm.addField(myGraphicsMagickEnabled, myGraphicsMagickEnabled);
myGraphicsMagickForm.addField(myGraphicsMagickBinary, myGraphicsMagickBinary);
myGraphicsMagickForm.addField(myGraphicsMagickBinarySelect, myGraphicsMagickBinarySelect);
myGraphicsMagickForm.addField(myGraphicsMagickHomepageButton, myGraphicsMagickHomepageButton);
Panel graphicsMagickPanel =
getComponentFactory()
.surroundWithPanel(
myGraphicsMagickForm,
FORM_PANEL_MARGIN_INFO,
getBundleString("miscConfigPanel.caption.GraphicsMagick"));
addComponent(graphicsMagickPanel);
addDefaultComponents(0, 5, 0, 5, false);
initFromConfig();
}
