public void destroy() {
setAFPChain(null);
mouseMoLi.destroy();
jmol = null;
ca1 = null;
ca2 = null;
selection = null;
}
private void selectEQR() {
selection.clear();
List<Integer> pos1 = DisplayAFP.getEQRAlignmentPos(afpChain);
for (int pos : pos1) {
selection.flip(pos);
}
mouseMoLi.triggerSelectionLocked(true);
updateJmolDisplay();
this.repaint();
}
public AligPanel() {
super();
this.setBackground(Color.white);
coordManager = new AFPChainCoordManager();
seqFont = new Font("SansSerif", Font.PLAIN, 12);
eqFont = new Font("SansSerif", Font.BOLD, 12);
mouseMoLi = new AligPanelMouseMotionListener(this);
this.addMouseMotionListener(mouseMoLi);
this.addMouseListener(mouseMoLi);
mouseMoLi.addAligPosListener(this);
selection = new BitSet();
colorBySimilarity = false;
colorByAlignmentBlock = false;
}
public void addAlignmentPositionListener(AlignmentPositionListener li) {
mouseMoLi.addAligPosListener(li);
}
