protected boolean restore() {
ModelSet modelSet = vwr.ms;
if (modelSet == null) return false;
modelSet.deleteAllBonds();
for (int i = bondCount; --i >= 0; ) {
Connection c = connections[i];
int ac = modelSet.ac;
if (c.atomIndex1 >= ac || c.atomIndex2 >= ac) continue;
Bond b =
modelSet.bondAtoms(
modelSet.at[c.atomIndex1],
modelSet.at[c.atomIndex2],
c.order,
c.mad,
null,
c.energy,
false,
true);
b.colix = c.colix;
b.shapeVisibilityFlags = c.shapeVisibilityFlags;
}
for (int i = bondCount; --i >= 0; ) modelSet.bo[i].index = i;
vwr.setShapeProperty(JC.SHAPE_STICKS, "reportAll", null);
return true;
}
protected Connections(Viewer vwr) {
ModelSet modelSet = vwr.ms;
if (modelSet == null) return;
this.vwr = vwr;
bondCount = modelSet.bondCount;
connections = new Connection[bondCount + 1];
Bond[] bonds = modelSet.bo;
for (int i = bondCount; --i >= 0; ) {
Bond b = bonds[i];
connections[i] =
new Connection(
b.atom1.i, b.atom2.i, b.mad, b.colix, b.order, b.getEnergy(), b.shapeVisibilityFlags);
}
}