protected Dataset getCompleteData(IMonitor mon) throws Exception {
IHierarchicalDataFile file = null;
try {
if (mon != null) mon.worked(1);
file = HierarchicalDataFactory.getReader(path);
final hdf.object.Dataset set = (hdf.object.Dataset) file.getData(fullPath);
if (set.getStartDims() == null) set.getMetadata();
/**
* The diamond slicing can leave the dataset in memory, and the selection. Therefore if they
* were slicing in the DExplore view before going here, the full selection is broken, there is
* a sub slice selected.
*
* <p>TODO Get Peter to fix this some time.
*/
loader.resetDims(set);
final Object val = set.read();
return H5Utils.getSet(val, set);
} finally {
if (file != null) file.close();
}
}
/** { "Name", "Class", "Dims", "Type", "Size" }; */
@Override
public String getColumnText(Object element, int columnIndex) {
if (!(element instanceof TreeNode)) return null;
final TreeNode node = (TreeNode) element;
HObject object = (HObject) ((DefaultMutableTreeNode) node).getUserObject();
if (file.isClosed()) {
try {
this.file = HierarchicalDataFactory.getReader(file.getPath());
} catch (Exception e) {
logger.error("Cannot re-create link to " + file.getPath());
}
}
try {
object = (HObject) file.getData(object.getFullName());
} catch (Exception e) {
logger.error("Cannot re-create link to recorde " + object.getFullName());
}
if (object == null) return null;
switch (columnIndex) {
case 0:
return object.getName();
case 1:
if (object instanceof Group) {
return "Group";
} else if (object instanceof Dataset) {
return "Dataset";
} else {
return object.getClass().getConstructors()[0].getName();
}
case 2:
if (object instanceof Dataset) {
long[] shape;
try {
shape = HierarchicalDataUtils.getDims((Dataset) object);
} catch (Exception e) {
return "";
}
if (shape == null) return "";
return Arrays.toString(shape);
}
return "";
case 3:
if (object instanceof Dataset) {
return "" + ((Dataset) object).getDatatype().getDatatypeDescription();
}
return "";
case 4:
if (object instanceof Dataset) {
long memSize;
try {
memSize = HierarchicalDataUtils.getSize((Dataset) object);
} catch (Exception e) {
return "";
}
if (memSize < 0) return "";
return formatSize(memSize);
}
return "";
default:
return null;
}
}
