Ejemplo n.º 1
0
  public void fillData(Set<TestResult> testResults) {
    Transaction tra = RegaDBMain.getApp().createTransaction();

    for (int i = 0; i < testItems.size(); i++) {
      TestItem ti = testItems.get(i);
      Test test = getTest(tra, ti);
      if (test == null) continue;

      TestResult theTr = null;
      for (TestResult tr : testResults) {
        if (tr.getTest().getDescription().equals(test.getDescription())) {
          theTr = tr;
          break;
        }
      }

      FormField f = testFormFields.get(i);
      if (theTr != null) {
        if (f instanceof ComboBox) {
          ((ComboBox) f).selectItem(theTr.getTestNominalValue().getValue());
        } else {
          if (theTr.getValue() != null) f.setText(theTr.getValue());
          else f.setText(new String(theTr.getData()));
        }
      }
    }
  }
Ejemplo n.º 2
0
  public void init(InteractionState interactionState, IForm form, FormTable table) {
    Transaction tr = RegaDBMain.getApp().createTransaction();

    for (UITestItem ti : testItems) {
      Test t = getTest(tr, ti);
      if (t != null) {
        Label l = new Label(TestComboBox.getLabel(t));
        FormField testResultField;
        if (ValueTypes.getValueType(t.getTestType().getValueType()) == ValueTypes.NOMINAL_VALUE) {
          testResultField = new ComboBox(interactionState, form);
          for (TestNominalValue tnv : t.getTestType().getTestNominalValues()) {
            ((ComboBox) testResultField)
                .addItem(new DataComboMessage<TestNominalValue>(tnv, tnv.getValue()));
          }
          ((ComboBox) testResultField).sort();

          if (ti.noValueSelected) ((ComboBox) testResultField).addNoSelectionItem();

          ((ComboBox) testResultField).selectIndex(0);

          if (ti.defaultValue != null && interactionState.isEditable())
            ((ComboBox) testResultField).selectItem(ti.defaultValue);
        } else {
          testResultField =
              FormField.getTextField(
                  ValueTypes.getValueType(t.getTestType().getValueType()), interactionState, form);
        }

        table.addLineToTable(l, testResultField);
        testFormFields.add(testResultField);
      } else {
        System.err.println("ViralIsolateForm: test does not exist: '" + ti.description + '\'');
      }
    }
  }
Ejemplo n.º 3
0
 private List<Test> filterTests(List<Test> tests, TestType gssTT) {
   List<Test> filteredTest = new ArrayList<Test>();
   for (Test test : tests) {
     if (test.getAnalysis() != null && Equals.isSameTestType(gssTT, test.getTestType()))
       filteredTest.add(test);
   }
   return filteredTest;
 }
Ejemplo n.º 4
0
 private boolean showTest(InteractionState is, Test t, Set<TestResult> results) {
   if (is.isEditable()) {
     return true;
   } else {
     if (results != null) {
       for (TestResult tr : results) {
         if (tr.getTest().getTestIi() == t.getTestIi()) return true;
       }
     }
     return false;
   }
 }
Ejemplo n.º 5
0
  public void loadTable(
      Collection<String> drugClasses,
      boolean showMutations,
      boolean showAllAlgorithms,
      Set<TestResult> testResults,
      TestType gssTestType) {
    clear();

    if (gssTestType == null) {
      return;
    }

    Transaction t = RegaDBMain.getApp().createTransaction();
    List<DrugClass> sortedDrugClasses_ = t.getDrugClassesSortedOnResistanceRanking();

    // drug names - column position
    HashMap<String, Integer> algoColumn = new HashMap<String, Integer>();
    int col = 0;
    getElementAt(0, col).addWidget(new WText(""));
    col = getColumnCount();
    getElementAt(0, col).addWidget(new WText(""));
    int maxWidth = 0;
    for (Test test : getAlgorithms(t, gssTestType, showAllAlgorithms)) {
      col = getColumnCount();
      getElementAt(0, col).addWidget(new TableHeader(test.getDescription()));
      getElementAt(0, col).setStyleClass("column-title");

      algoColumn.put(test.getDescription(), col);
      maxWidth += test.getDescription().length();
    }

    // drug names - row position
    HashMap<String, Integer> drugColumn = new HashMap<String, Integer>();

    List<DrugGeneric> genericDrugs;
    int row;
    boolean firstGenericDrugInThisClass;
    for (DrugClass dc : sortedDrugClasses_) {
      if (!drugClasses.contains(dc.getClassId())) continue;

      genericDrugs = t.getDrugGenericSortedOnResistanceRanking(dc);
      firstGenericDrugInThisClass = true;
      for (DrugGeneric dg : genericDrugs) {
        row = getRowCount();
        if (firstGenericDrugInThisClass) {
          getElementAt(row, 0).addWidget(new TableHeader(dc.getClassId() + ":"));
          firstGenericDrugInThisClass = false;
          getElementAt(row, 0).setStyleClass("form-label-area");
        }
        getElementAt(row, 1).addWidget(new TableHeader(dg.getGenericId()));
        drugColumn.put(dg.getGenericId(), row);
        getElementAt(row, 1).setStyleClass("form-label-area");
      }
    }

    ViralIsolateFormConfig config =
        RegaDBSettings.getInstance().getInstituteConfig().getViralIsolateFormConfig();

    // clear table
    for (int i = 1; i < getRowCount(); i++) {
      for (int j = 2; j < getColumnCount(); j++) {
        ViralIsolateFormUtils.putResistanceTableResult(
            null, getElementAt(i, j), config, false, showMutations);
      }
    }

    Integer colN;
    Integer rowN;
    for (TestResult tr : testResults) {
      if (tr.getTest().getAnalysis() != null
          && Equals.isSameTestType(gssTestType, tr.getTest().getTestType())) {
        if (!drugClasses.contains(tr.getDrugGeneric().getDrugClass().getClassId())) continue;

        colN = algoColumn.get(tr.getTest().getDescription());
        rowN = drugColumn.get(ViralIsolateFormUtils.getFixedGenericId(tr));
        if (colN != null && rowN != null) {
          ViralIsolateFormUtils.putResistanceTableResult(
              tr, getElementAt(rowN, colN), config, false, showMutations);
        }
      }
    }
  }